| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0816 |
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| Symbol | cpdB |
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| ID | 8089952 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | - |
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| Start bp | 923375 |
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| End bp | 925327 |
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| Gene Length | 1953 bp |
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| Protein Length | 650 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 644834887 |
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| Product | bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein |
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| Protein accession | YP_002986448 |
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| Protein GI | 242238267 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
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| TIGRFAM ID | [TIGR01390] 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0246666 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACACA CGCTGGCGCT GAGCCTGCTT TCGGTCGCCA TTCTTTCCGC CACCGCCCAG
GCGGCCACCG TCGATTTGCG CGTGCTGGAA ACGACCGACC TGCACAGCAA CATGATGGAC
TTCGACTATT ACAAAGACAG CGCGACGGAC AAATTCGGCC TGGTGCGCAC CGCCAGCCTG
ATTCATGCCG CCCGACAGCA GGTCGTCAAC AGCGTATTGG TCGACAACGG CGATATCATT
CAAGGTAGCC CACTCGGCGA TTATATGGCG GCGAAAGGGT TACAAAAAGG CGAAGTGCAC
CCGGTCTACC TGGCGATGAA CACCCTCGAT TACACCGTCG GCAACCTCGG CAACCACGAA
TTCAACTACG GTCTGGACTA CCTGCAAAAT GCGCTGGCCG GGGCACATTT TCCCTACGTC
AACGCCAACG TGCTGAACGC CAAAACCCAA AAACCGCTGT TCATGCCCTA TCTGATCAAG
CCAACCGAGG TCAGGGATCG CGACGGAAAG ACGCATAAGC TGCGCATCGG CTACATCGGC
TTCGTACCGC CGCAGATAAT GGTGTGGGAC AAAGCCAACC TCAGCGGCAA AGTCACGGTG
GCGGATATCA CCGCAACGGC GAAAAAATGG ATTCCGGAAA TGCGCCAAAA AGGCGCGGAT
GTCGTTATCG CCATCCCGCA CTCCGGCCTC TCCGCCGAGC CTTACCGCGC CATGGCGGAA
AACTCGGTCT ACTACCTGAG CCAAATCCCC GGCATTGACG CCATCTTGTT CGGCCATGCC
CATGCCGTAT TCCCCAGTAA AGACTTCGCC GCCATCAAGG GCGCCGACAT CGCGCGCGGG
ACGCTCAATG GTATTCCGGC AGTCATGCCG GGCATGTGGG GCGACCATCT GGGCGTGGTG
GATCTGGTGC TGAACAACGA CCACGGCGCC TGGAAAGTCA CACAGGGCAC GGCACAAGCC
CGCCCGATTT ACGACAAGAC CCAGAAAACA TCGGTGGCGG CGGAAGATCC GCAACTGGTG
CAAGTGCTGT CTGAAGCGCA TCAAAAAACC CGCGAGTTTG TCAGCAAGCC GATCGGCCAA
GCCTCGGACA ACATGTACAG CTACCTGTCG CTGATTCAGG ACGATCCCAC CGTGCAGATC
GTCAATAACG CCCAGCGATC CTATGTCGAA CACTTTATTC AGGGCGACCC GGATCTGGCG
AAACTGCCGG TACTTTCCGC GGCGGCGCCG TTCAAAGCGG GCGGACGCAA GAACGATCCG
GCTGGTTACG TAGAAGTGGA AAAAGGCCAG CTCACCTTCC GCAACGCGGC CGATTTGTAC
CTGTACCCCA ACACGTTAGT GGTGGTGAAA GTCAACGGCG AGCAGGTTCG CGAATGGTTG
GAATGTTCCG CCGGCCAGTT CAACCAGATC GATATCCACA ACGCCAAGCC GCAATCCCTG
ATCAACTGGG ACGGTTTCCG GACTTACAAT TTCGACGTGA TCGACGGCGT GAAGTACCAG
ATCAACGTCA CCCAGCCCGC CCGTTACGAC GGCGAATGCA AACTCATCAA TCCGAATGCT
CATCGCATTG AAGCGCTGAC ATTCAACGGC AAACCCATCG ATCCGAAAGC GACTTTCCTG
ATCGCCACCA ATAACTATCG CGCTTATGGC GAGAAATTCG CCGGCACCGG CGAGAAGCAC
ATCGCCTTCG CGTCGCCGGA TGAGAATCGC TCGGTGCTGG CGGCCTACAT CAGCGCCGAG
ACGAAAAAAT CCGGCGAAGT GAAACCGGAG GCGGACAACA ACTGGCGCCT GGCGCGCATC
GTCAGCGATA CGCCGCTGGA TATTCGGCTG GAAACCGCGC CCTCCGCCAA AGCGGCAGCG
TTTATCAAGG AGAAGGCCCA GTACCCGCTG ACGCAGGTCG GCACCGACGA TATCGGCTTC
GCGGTTTACC GCGTCGATCT GCAACAACAG TAA
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| Protein sequence | MKHTLALSLL SVAILSATAQ AATVDLRVLE TTDLHSNMMD FDYYKDSATD KFGLVRTASL
IHAARQQVVN SVLVDNGDII QGSPLGDYMA AKGLQKGEVH PVYLAMNTLD YTVGNLGNHE
FNYGLDYLQN ALAGAHFPYV NANVLNAKTQ KPLFMPYLIK PTEVRDRDGK THKLRIGYIG
FVPPQIMVWD KANLSGKVTV ADITATAKKW IPEMRQKGAD VVIAIPHSGL SAEPYRAMAE
NSVYYLSQIP GIDAILFGHA HAVFPSKDFA AIKGADIARG TLNGIPAVMP GMWGDHLGVV
DLVLNNDHGA WKVTQGTAQA RPIYDKTQKT SVAAEDPQLV QVLSEAHQKT REFVSKPIGQ
ASDNMYSYLS LIQDDPTVQI VNNAQRSYVE HFIQGDPDLA KLPVLSAAAP FKAGGRKNDP
AGYVEVEKGQ LTFRNAADLY LYPNTLVVVK VNGEQVREWL ECSAGQFNQI DIHNAKPQSL
INWDGFRTYN FDVIDGVKYQ INVTQPARYD GECKLINPNA HRIEALTFNG KPIDPKATFL
IATNNYRAYG EKFAGTGEKH IAFASPDENR SVLAAYISAE TKKSGEVKPE ADNNWRLARI
VSDTPLDIRL ETAPSAKAAA FIKEKAQYPL TQVGTDDIGF AVYRVDLQQQ
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