| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0788 |
|---|
| Symbol | |
|---|
| ID | 8088061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 897101 |
|---|
| End bp | 899560 |
|---|
| Gene Length | 2460 bp |
|---|
| Protein Length | 819 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 644834860 |
|---|
| Product | exoribonuclease R |
|---|
| Protein accession | YP_002986421 |
|---|
| Protein GI | 242238240 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0557] Exoribonuclease R |
|---|
| TIGRFAM ID | [TIGR00358] VacB and RNase II family 3'-5' exoribonucleases
[TIGR02063] ribonuclease R |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCACAAG ATCCATTCCT GGAACGCGAA GCAGAAAAAT ATGAATCTCC CATCCCCAGC
CGCGAATTTA TTCTGGAACA CCTGAGAAAA AGGGATACGC CCATCAGCCG CGATGAGCTG
GCCACTGATT TGGCGCTCTC CTCCGATGAA CAGCTGGAAG CGTTGCGTCG CCGCTTGCGG
GCGATGGAGC GTGACGGACA ACTGGTCTTT ACCCGTCGCC AATGCTATGC GCTGCCGGAA
AAACTGGATC TGGTGCGCGG CGCGGTGATC GGTCATCGCG ATGGTTACGG GTTCCTGCGC
GTGGACGGCC GTAAGGATGA CCTCTACCTG TCGGCGGATC AGATGAAGCT GGCAATCCAT
GGCGACGTGG TGCTGGCGCA ACCGTTGGGC GAGGATCGTC GTGGCCGCCG TGAAGCGCGC
ATCGTGCGGG TGTTGGAACC GCGCACCAGC CAGATCGTCG GGCGTTATTT CACGGAAGTC
GGATCCGGTT TCGTGGTGCC GGACGATAGC CGGCTCAGTT TCGATATTTT GATCCCGCCG
GAGTCTATCT GCGGCGCGCG CATGGGTTCC GTGGTGGTGG TTGAGCTGAT CCAACGGGCT
AACCGTCGCA CCAAAGCCAT CGGCAAAATT GTGGAAGTGC TGGGCGACAA TATGGGCACC
GGCCTGGCGG TGGATATCGC GCTGCGTACC CATGAAATTC CGCATACCTG GTCGCAGCAG
GTGCAGAATC AGGTGGCTGA TTTGACGGAA GAGGTGCCGG AAAGCGCCAA AAAAGGGCGC
GTGGATTTGC GCACACTGCC GCTGGTGACT ATCGACGGCG AAGACGCTCG CGATTTTGAC
GACGCGGTCT ATTGCGAGAA AAAACGCGGC GGGGGGTGGC GGCTTTGGGT GGCGATCGCC
GACGTCAGCT ACTATGTCCG GCCCGGCACC GCGTTGGATC ACGAGGCGCG GGCGCGCGGC
ACCTCGGTCT ATTTCCCATC TCAGGTAGTG CCGATGCTGC CGGAAGTGCT GTCCAACGGG
CTGTGTTCGC TGAACCCGCA GGTCGACCGC CTGTGTATGG TGTGCGAAAT GACGGTGTCC
ACGCAGGGGA AACTCTCCGG TTTCAAATTC TATGAAGCGG TGATGAGTTC CCATGCCCGG
CTGACTTACA CCAAAGTGTG GCACATCCTG CAGGGCGACG AGGCGCTGCG CGGGCAATAT
CAGGTGCTGG TGGAACCGCT GGAGGAATTG CACCGGATGT ACAAGGTGCT GGATCACGCC
CGTGAAGAAC GTGGCGGCAT CGCCTTCGAA ACCGAAGAAG CCAAATTCAT TTTCAACGCC
GAACGCCGTA TCGAACGGGT GGAAGCGTCG GTACGCAATG ACGCCCACAA GTTGATTGAA
GAGTGCATGA TTTTGGCGAA TATCGCGGCG GCCAGGTTTG TAGAGAAGAA TAGCGAGCCC
GCGCTCTTTC GCGTGCATGA TCGCCCCAGC GAGGATCATG TCATGGCACT GCGCAGCGTG
CTGGCGGAAC TGGGATTGAC GCTGAAAGGC GGTATGAAGC CGCAGCCGAA GGATTACGCC
GAGCTGATGG ACGAGGTGGC GGAGCGTCCC GATCACGAGA TGCTGCAAAC CATGATGCTG
CGCTCCATGA AACAGGCGAT CTACGACCCG GAAAATCGCG GCCATTTCGG ATTGGCGTTG
ACCTCTTATG CGCATTTCAC CTCGCCGATT CGCCGTTACC CTGATCTTTC GTTGCATCGC
GCCATTAAAT ATCTGCTCGG CAATCGGCAG GAGCGGTGGA CGCCGAGTGG CGGCTGGCAC
AGCGATTTCA CTGAAATGCT GCAATTGGGG CAGCACTGTT CCATGACCGA GCGCCGGGCG
GATGAAGCCA CTCGCGATGT GGCGGATTGG CTGAAATGCG ACTTTATGCA GGATCATGTC
GGGGAAGTCT TTACCGGGAT TATTTCCAGC GTGACCGGCT TTGGGTTCTT TGTGCGGTTA
AACGATCTGT TCATCGACGG TCTGGTTCAC GTTTCCACAC TGGATAACGA CTACTATCGT
TATGATAATG TCGGCCAGCG CTTGATCGGC GAGTCTCGCG GCCAGACGTA TCGGCTGGGC
GACGAGGTGC AAATCCGCGT CGATGCGGTA CATATGGATG AGCGCAATAT CGACTTCACG
CTGGTATCCA CCACCCGTCG GGTGCGGGGG GAAGGCAAGA CCGAACGCGA TCGGGCGAAG
AAAGGCGCTG CCGCCGAGAG AAAGCCCGCA CGCCGTCAGG CCGGCAAGCG CGTGAATTTC
GAGCCGGACA GTGCGTTTCG CGCCGAAGGC GCAGGCAAGC GTAAAAAAGC CGCCGAGGCC
AAGCCGGGAG GCAAGAAGCA AGCGTCGCGC ACGAAAAAAA ACGCAGAGAA AACCCGTAAA
ATCGCTGCGG CAACGCGCGC CAAACGGGCC GGCAAGAAAA AAACGGCGGC AGAAGAGTAA
|
|---|
| Protein sequence | MSQDPFLERE AEKYESPIPS REFILEHLRK RDTPISRDEL ATDLALSSDE QLEALRRRLR
AMERDGQLVF TRRQCYALPE KLDLVRGAVI GHRDGYGFLR VDGRKDDLYL SADQMKLAIH
GDVVLAQPLG EDRRGRREAR IVRVLEPRTS QIVGRYFTEV GSGFVVPDDS RLSFDILIPP
ESICGARMGS VVVVELIQRA NRRTKAIGKI VEVLGDNMGT GLAVDIALRT HEIPHTWSQQ
VQNQVADLTE EVPESAKKGR VDLRTLPLVT IDGEDARDFD DAVYCEKKRG GGWRLWVAIA
DVSYYVRPGT ALDHEARARG TSVYFPSQVV PMLPEVLSNG LCSLNPQVDR LCMVCEMTVS
TQGKLSGFKF YEAVMSSHAR LTYTKVWHIL QGDEALRGQY QVLVEPLEEL HRMYKVLDHA
REERGGIAFE TEEAKFIFNA ERRIERVEAS VRNDAHKLIE ECMILANIAA ARFVEKNSEP
ALFRVHDRPS EDHVMALRSV LAELGLTLKG GMKPQPKDYA ELMDEVAERP DHEMLQTMML
RSMKQAIYDP ENRGHFGLAL TSYAHFTSPI RRYPDLSLHR AIKYLLGNRQ ERWTPSGGWH
SDFTEMLQLG QHCSMTERRA DEATRDVADW LKCDFMQDHV GEVFTGIISS VTGFGFFVRL
NDLFIDGLVH VSTLDNDYYR YDNVGQRLIG ESRGQTYRLG DEVQIRVDAV HMDERNIDFT
LVSTTRRVRG EGKTERDRAK KGAAAERKPA RRQAGKRVNF EPDSAFRAEG AGKRKKAAEA
KPGGKKQASR TKKNAEKTRK IAAATRAKRA GKKKTAAEE
|
|---|
| |