Gene Dd703_0593 details

Gene Information

• Locus tag: Dd703_0593
• Symbol: carB
• ID: 8089000
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Dickeya dadantii Ech703
• Kingdom: Bacteria
• Replicon accession: NC_012880
• Strand: +
• Start bp: 667902
• End bp: 671126
• Gene Length: 3225 bp
• Protein Length: 1074 aa
• Translation table: 11
• GC content: 58%
• IMG OID: 644834665
• Product: carbamoyl phosphate synthase large subunit
• Protein accession: YP_002986226
• Protein GI: 242238045
• COG category: [E] Amino acid transport and metabolism; [F] Nucleotide transport and metabolism
• COG ID: [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ)
• TIGRFAM ID: [TIGR01369] carbamoyl-phosphate synthase, large subunit

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.820402
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCCAAAAC GTACAGACAT AAAAAGTATC CTGATTCTTG GCGCCGGCCC GATTGTGATC 
GGTCAGGCGT GCGAATTTGA CTACTCCGGC GCCCAGGCGT GTAAGGCGCT GCGTGAAGAA 
GGCTACCGTG TGATTCTGGT GAACTCCAAC CCGGCCACGA TCATGACCGA CCCGGAGATG 
GCGGACGCCA CCTACATTGA GCCGATTCAC TGGGAAGTGG TGCGCAAGAT TATCGAAAAA 
GAACGCCCGG ATGCGGTGCT GCCGACGATG GGCGGCCAGA CGGCGCTGAA CTGTGCGCTG 
GAGCTGGAAC GTCAGGGCGT GCTGGCGGAA TTCGGCGTGA CCATGATCGG CGCTACTGCC 
GATGCGATTG ATAAAGCGGA AGATCGTCGC CGGTTCGACA TCGCGATGAA AAAAATCGGG 
CTGGAAACCG CCCGTTCCGG CATCGCGCAT ACGATGGACG AAGCGCTGGC GGTTGCTGCG 
GATGTCGGCT ACCCGTGCAT TATCCGCCCG TCATTTACGA TGGGCGGCAC CGGCGGCGGT 
ATTGCGTACA ACCGTGAAGA GTTCGAAGAA ATCTGCGCGC GTGGCCTGGA TCTGTCACCG 
ACCAACGAAT TGTTGATCGA CGAATCGCTG ATCGGCTGGA AAGAGTATGA AATGGAAGTG 
GTGCGGGATA AAAACGACAA CTGCATCATC GTCTGCTCGA TTGAAAACCT TGACGCCATG 
GGGATCCACA CCGGCGACTC CATTACGGTA GCGCCCGCCC AGACCCTGAC CGACAAGGAA 
TACCAGATCA TGCGTAACGC CTCGATGGCG GTACTGCGTG AAATCGGCGT GGAAACCGGC 
GGTTCTAACG TACAGTTCGC GGTGAACCCG AAAACCGGTC GCCTGATTGT CATCGAAATG 
AACCCGCGCG TGTCCCGTTC TTCGGCGTTG GCGTCCAAAG CGACCGGCTT CCCGATCGCT 
AAGATCGCCG CCAAGCTGGC GGTCGGTTAT ACGCTGGACG AGCTGATGAA CGACATCACC 
GGCGGCCGTA CTCCGGCGTC TTTTGAGCCC TCAATCGATT ACGTGGTCAC TAAGATCCCG 
CGTTTCAACT TCGAAAAATT CGCCGGCGCC AACGATCGCC TGACCACGCA GATGAAATCG 
GTGGGTGAAG TGATGGCGAT CGGCCGCACC CAGCAGGAAT CGTTGCAGAA AGCGCTGCGT 
GGGCTGGAAG TCGGCGCAAC GGGTTTCGAT CCGAAAGTGA GCCTGGACGA TCCGGAAGCA 
TTGACCAAAA TCCGCCGTGA ACTGAAAGAT GCAGGCGGCG AGCGTATCTG GTATCTGGCA 
GATGCGTTCC GTGCCGGTAT GTCTGTCGAC GGCGTGTTCA ACCTGACCAA CATTGATCGT 
TGGTTCCTGG TGCAGATTGA AGAGCTGGTT CGTCTGGAAG AGCAGGTTTC CGAGCTGGGC 
GCCAACGGCC TGACGTCGGA ATTTCTGCGT CTGTTAAAGC GCAAAGGTTT CGCCGATGCC 
CGCCTGGCTA AACTGGCCGG GGTGTCCGAA GGTGAGATTC GCAAACTGCG CGCCAAATAC 
AACCTGCATC CGGTTTATAA GCGTGTGGAT ACCTGTGCCG CGGAATTCGC TACCGATACC 
GCCTACCTGT ACTCCACTTA TGATGAAGAG TGCGAAGCGA ATCCGAATCA TGATCGCGAC 
AAGATTATGG TGCTGGGCGG TGGGCCGAAC CGCATCGGTC AGGGTATTGA GTTCGACTAC 
TGCTGCGTGC ATGCGGCGCT GGCGTTGCGT GAAGATGGTT ATGAAACCAT CATGGTCAAC 
TGTAACCCGG AAACGGTGTC CACGGATTAC GATACGTCCG ACCGTCTTTA CTTCGAGCCG 
GTCACGCTGG AAGACGTGCT GGAAATTGTA CGTGTTGAGC AGCCGAAGGG CGTCATCGTG 
CAATACGGCG GCCAAACGCC GCTGAAATTG GCCCGTCAGC TTGAAGCCGC CGGGGTGCCG 
GTGATCGGCA CCAGCCCGGA CGCCATCGAC CGGGCTGAAG ACCGCGAACG TTTCCAGCAG 
GCGGTTAATC GTCTGTCGCT GAAACAGCCG GCCAACGCCA CCGTTTCCAC CATCGATCAG 
GCCGTGGAGA AAGCGGCAGC CATCGGTTAT CCGCTGGTGG TGCGTCCGTC TTACGTGCTG 
GGTGGCCGCG CGATGGAAAT CGTGTACGAC GAAGTCGACC TGCGGCGCTA CTTCCAGACG 
GCGGTCAGCG TATCTAATGA TGCGCCGGTG CTGTTGGATC GTTTCCTGGA CGATGCGGTG 
GAAGTGGATG TGGACGCTAT CTGCGACGGT GAACGTGTGC TGATTGGCGG TATTATGGAG 
CATATCGAGC AGGCTGGCGT GCATTCCGGC GACTCAGCCT GTTCGCTGCC GGCTTACACC 
CTGAGCAAGG AAATTCAGGA TGTGATGCGT CAGCAGGTGG AAAAACTGGC GTTCGAACTG 
TCCGTCCGCG GCCTGATGAA CGTGCAGTTT GCGGTGAAAG ATAACGAAGT TTACCTGATT 
GAGGTGAACC CCCGCGCCGC GCGTACCGTA CCGTTCGTCT CCAAGGCGAC CGGCGTGCCG 
TTGGCGAAGG TCGCAGCCCG AGTGATGGTG GGTAAAACGC TGGCCGCGCA GGGCGTTACT 
AAAGAAGTGA TTCCGCCTTA CTACTCGGTG AAGGAAGTGG TGCTGCCGTT CAACAAGTTC 
CCTGGCGTCG ACCCGATTCT GGGGCCTGAA ATGCGTTCCA CCGGTGAAGT GATGGGGGTT 
GGCCGGACGT TTGCGGAAGC TTTCGCCAAG GCGATGTTAG GCAGCAATTC ACCGATGAAG 
AAAATCGGCC GGGCGTTGTT GTCAGTGAGA GAGGGCGATA AGGCGCGGGT CGTCGATCTG 
GCGGCCAAGC TGCTCAAGCA TGGTTTCGAG CTGGATGCGA CCCACGGAAC GGCGATTGTA 
CTGGGCGAAG CCGGCATTAA TCCCCGGTTA GTGAATAAGG TGCACGAAGG GCGTCCGCAC 
ATTCAGGATC GCATCAAGAA TGGCGAGTAT ACCTACATCG TGAACACCAC TGCGGGCCGC 
CAGGCGATTG AAGACTCCAA GCTGATTCGC CGCAGCGCGT TGCAGTACAA GGTGCACTAC 
GACACCACGA TGAACGGCGG CTTTGCCACG GCGATGTCGC TGAATGCCGA CCCGACCGAG 
CAGGTGATCT CCGTACAGGA GATGCATGCC CGCATTCGTG GGTAA 

 

Protein sequence

MPKRTDIKSI LILGAGPIVI GQACEFDYSG AQACKALREE GYRVILVNSN PATIMTDPEM 
ADATYIEPIH WEVVRKIIEK ERPDAVLPTM GGQTALNCAL ELERQGVLAE FGVTMIGATA 
DAIDKAEDRR RFDIAMKKIG LETARSGIAH TMDEALAVAA DVGYPCIIRP SFTMGGTGGG 
IAYNREEFEE ICARGLDLSP TNELLIDESL IGWKEYEMEV VRDKNDNCII VCSIENLDAM 
GIHTGDSITV APAQTLTDKE YQIMRNASMA VLREIGVETG GSNVQFAVNP KTGRLIVIEM 
NPRVSRSSAL ASKATGFPIA KIAAKLAVGY TLDELMNDIT GGRTPASFEP SIDYVVTKIP 
RFNFEKFAGA NDRLTTQMKS VGEVMAIGRT QQESLQKALR GLEVGATGFD PKVSLDDPEA 
LTKIRRELKD AGGERIWYLA DAFRAGMSVD GVFNLTNIDR WFLVQIEELV RLEEQVSELG 
ANGLTSEFLR LLKRKGFADA RLAKLAGVSE GEIRKLRAKY NLHPVYKRVD TCAAEFATDT 
AYLYSTYDEE CEANPNHDRD KIMVLGGGPN RIGQGIEFDY CCVHAALALR EDGYETIMVN 
CNPETVSTDY DTSDRLYFEP VTLEDVLEIV RVEQPKGVIV QYGGQTPLKL ARQLEAAGVP 
VIGTSPDAID RAEDRERFQQ AVNRLSLKQP ANATVSTIDQ AVEKAAAIGY PLVVRPSYVL 
GGRAMEIVYD EVDLRRYFQT AVSVSNDAPV LLDRFLDDAV EVDVDAICDG ERVLIGGIME 
HIEQAGVHSG DSACSLPAYT LSKEIQDVMR QQVEKLAFEL SVRGLMNVQF AVKDNEVYLI 
EVNPRAARTV PFVSKATGVP LAKVAARVMV GKTLAAQGVT KEVIPPYYSV KEVVLPFNKF 
PGVDPILGPE MRSTGEVMGV GRTFAEAFAK AMLGSNSPMK KIGRALLSVR EGDKARVVDL 
AAKLLKHGFE LDATHGTAIV LGEAGINPRL VNKVHEGRPH IQDRIKNGEY TYIVNTTAGR 
QAIEDSKLIR RSALQYKVHY DTTMNGGFAT AMSLNADPTE QVISVQEMHA RIRG