| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0512 |
|---|
| Symbol | |
|---|
| ID | 8088836 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Dickeya dadantii Ech703 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012880 |
|---|
| Strand | + |
|---|
| Start bp | 571131 |
|---|
| End bp | 572705 |
|---|
| Gene Length | 1575 bp |
|---|
| Protein Length | 524 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 644834582 |
|---|
| Product | transcriptional regulator, NifA, Fis Family |
|---|
| Protein accession | YP_002986145 |
|---|
| Protein GI | 242237964 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG3604] Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains |
|---|
| TIGRFAM ID | [TIGR01817] Nif-specific regulatory protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCCATT TACCCGAGGC GGGCAAAGTC GTATGGCGTT TTGATTTGTC TCAGCAATTT
ACCGCAGTGC AGCGTATCAG CGCGGCCCTG GGCCGCTCGA CGGAGGTGCG TCAGGCGTTG
CAGGCGGTAT TGCGGGTCTT GCATGACGAC GCCTTTATGC AGCACGGCAT GATTTGCCTG
TACGACAAAC AGCGCGGCGC GCTGACCGTG GAGGCGCTGC ATACGGAAGA CGAACAGGCG
ACCGCCAGCG GCAGCCAGAT TCGTTATCGC CCGGGAGAAG GGCTGGTGGG TACGGTGATG
GCGCAGTGCC AGCCGCTGGT GTTGCCGCGG GTGGCGGACG ATCAACGTTT TCTCGATCGC
CTTGGCCTGT ATGACTACAA CCTGCCGTTT ATCGCCGTGC CGCTGATGGG GTTGGATCCT
CATCCGATCG GCGTGCTGGC GGCGCAGCCG ATGGCGCGCT ACGAAGAGCG TCTGCCGTCG
TGCACCCGTT TTCTGGAAAC CGTCGCCAAT CTGGTGGCGC AAACGGTACG GCTGATGCAG
CCGATCAGGC GCGAGGCGGA CACGCCGGTA CCGGCGGCGC GCCCTGTCGC CTGCAAAATG
CCGCGGCCGT TCGGCTTCGA AAATATGGTG GGTAAGAGCC CGGCGATGCG CCAGACCATG
GAGATTATCC GCCAGGTCTC GCGCTGGGAT ACCACCGTGC TGGTGCGTGG AGAAAGCGGT
ACCGGTAAGG AACTGGTGGC CAACGCTATC CATTACAACT CACCGCGCAC CGACGCGCCG
TTCGTGAAAT TCAATTGCGC CGCCCTGCCG GATAACCTGC TGGAAAGCGA ACTGTTCGGG
CATGAGAAGG GCGCGTTCAC CGGTGCGGTG CGCCAGCGTA AAGGGCGTTT CGAACTGGCG
GACGGCGGCA CGCTGTTTCT GGATGAGATC GGCGAAAGCA GCGCGTCGTT TCAGGCTAAA
TTGTTGCGGA TTTTGCAGGA AGGCGAGATG GAACGGGTGG GCGGCGACGA AACCATCCGG
GTGGATGTGC GCATTGTGGC CGCCACCAAC CGTAATCTGG AAGAGGAAGT GCGGGCCGGT
CATTTCCGGG AAGACCTGTA TTACCGTCTG AACGTGATGC CGGTATCGCT GCCGCCGTTG
CGGGAGCGTC AGGAGGATAT CGCCGAACTG GCGCATTTTC TGGTGCGCAA GATTGCCCTG
CATCAGGGGC GGCAGCTGCG CATCAGCGAC GGCGCGATCC GTATGCTGAT GAGCTACAAC
TGGCCGGGCA ACGTGCGGGA ACTGGAGAAC TGCCTGGAGC GTTCGGCGGT GATGTCGGAA
AGTGGGTTGA TCGATCGCGA CGTTATTCTG TTCAACCACC ATGAAACGAC GCCGAAGATC
AGCAAAAGTG TTGTGCCGAC GCCGTCTCAG GAAGAGGGCT GGCTCGATCA GAATCTGGAT
GAGCGCCAGC GGCTGATCGC CGCGCTGGAG AAAACCGGCT GGGTGCAGGC CAAAGCGGCC
CGCTTGCTGG GGATGACGCC GCGTCAGGTG GCCTATCGCA TCCAGATTAT GGACATCAAT
GTGCACCGAC TGTAG
|
|---|
| Protein sequence | MTHLPEAGKV VWRFDLSQQF TAVQRISAAL GRSTEVRQAL QAVLRVLHDD AFMQHGMICL
YDKQRGALTV EALHTEDEQA TASGSQIRYR PGEGLVGTVM AQCQPLVLPR VADDQRFLDR
LGLYDYNLPF IAVPLMGLDP HPIGVLAAQP MARYEERLPS CTRFLETVAN LVAQTVRLMQ
PIRREADTPV PAARPVACKM PRPFGFENMV GKSPAMRQTM EIIRQVSRWD TTVLVRGESG
TGKELVANAI HYNSPRTDAP FVKFNCAALP DNLLESELFG HEKGAFTGAV RQRKGRFELA
DGGTLFLDEI GESSASFQAK LLRILQEGEM ERVGGDETIR VDVRIVAATN RNLEEEVRAG
HFREDLYYRL NVMPVSLPPL RERQEDIAEL AHFLVRKIAL HQGRQLRISD GAIRMLMSYN
WPGNVRELEN CLERSAVMSE SGLIDRDVIL FNHHETTPKI SKSVVPTPSQ EEGWLDQNLD
ERQRLIAALE KTGWVQAKAA RLLGMTPRQV AYRIQIMDIN VHRL
|
|---|
| |