| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Dd703_0337 |
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| Symbol | hofQ |
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| ID | 8088572 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Dickeya dadantii Ech703 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012880 |
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| Strand | + |
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| Start bp | 386382 |
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| End bp | 387662 |
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| Gene Length | 1281 bp |
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| Protein Length | 426 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644834403 |
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| Product | putative outer membrane porin HofQ |
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| Protein accession | YP_002985974 |
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| Protein GI | 242237793 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAGGGA TGTTCATATA CGGTATGACG CTGGTCATGG CGGCGCAGTG CGCTGATACG
TGGGCTAACG CAGAGACGCC TGTTTCGCTG GCGTTCGATG ATGTGCCGGT ACAACGGGTT
TTGCAGGCGT TGGCTGAGCA TCAGCAGCTG AATCTGGTGA TCGCACCGGG CGTGGAGGGG
AATGTGAGTC TGACTCTTGA GCGCGTACCG TGGCGGCAGG CGTTGGATAT TATTTTGCGT
ATGGGGGATC TCACGCTGGA ACGGGAAGGG CGCGTTCTGA TGGTCTACCC ACGAGAACAT
CTTGAAATGC TTCGCCTGCA ACAGGCTGAG GAGGATGAAC GGAAACAGCA GCAGCAGGCG
TTACTGAATT TGTCCGTGAC CTTGCGGCAT GCGGAATCAA CGGAAGTGGC CGCCAGTTTG
CAGAGTCAGC GGGGCACCTT GCTGACCGAA CGCGGCAGCG TCACCGTGGA TAAACGCACC
AATACTCTGA TTGTTCGGGA TGTCTCCTCC GCGCTGGAGC AGATCCGTTC GTGGCTGGAC
GTATTGGACA AGCCCCTCGC TCAGGTTCAA CTGGCGGCAC ACATTGTCAC CATCAGCAGC
GAGCATCTCA AGGCGCTGGG TGTGAACTGG GGGCTGGATG CTGGCGATGC AACGAAACAG
GCGCTAAGGA TGAACAACTT CAACATCAAC CTGCCTGTGG AAACGCCGAC CGTGAACGCC
GGTTTTCATC TTGCTCGTCT TAACGGACGA TTGCTGGATC TCGAACTCAT GGCGCTGGAG
CAAGAAGATG AAGTGGAAAT TATCGCCAGC CCCCGTCTGT TCACCGCGCA TCAGCAAACC
GCCAGTATCA AGCAGGGAAC CGAAATTCCT TATCAGGTTT CCAGCGGCGC CAGTGGTTCC
ACATCGATTG AGTTCAAAGA GGCGGTGCTG GGGATGGAAG TCACCCCCAG AATTTTGCAG
GGTGGGTTTA TTACCCTGAA TTTACTGATT AGTCAGAATA TGCCAGGGCG TTCTATCAAG
CAGGGCGAGG GGGAAATGCT GGCGATTGAT AAACAGGAAA TCCAGACGCA GGTTACGGTA
AAGGATGGGG AGACCATTGT TCTTGGCGGC ATTTTTCAGC AGCAAAAGAA CAGGACTGAG
CGGAAAGTTC CTGGACTGGG GGCGTTGCCG GGTATCGGTC GATTATTCAG CAGCAGTGAC
CGGCAGAATA CACGACGAGA ACTGGTGATT TTTATCACGC CGACGTTGAT TCAAGCTTCG
TTGCCGACGA AACAGCCCTG A
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| Protein sequence | MKGMFIYGMT LVMAAQCADT WANAETPVSL AFDDVPVQRV LQALAEHQQL NLVIAPGVEG
NVSLTLERVP WRQALDIILR MGDLTLEREG RVLMVYPREH LEMLRLQQAE EDERKQQQQA
LLNLSVTLRH AESTEVAASL QSQRGTLLTE RGSVTVDKRT NTLIVRDVSS ALEQIRSWLD
VLDKPLAQVQ LAAHIVTISS EHLKALGVNW GLDAGDATKQ ALRMNNFNIN LPVETPTVNA
GFHLARLNGR LLDLELMALE QEDEVEIIAS PRLFTAHQQT ASIKQGTEIP YQVSSGASGS
TSIEFKEAVL GMEVTPRILQ GGFITLNLLI SQNMPGRSIK QGEGEMLAID KQEIQTQVTV
KDGETIVLGG IFQQQKNRTE RKVPGLGALP GIGRLFSSSD RQNTRRELVI FITPTLIQAS
LPTKQP
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