Gene Rpic12D_4658 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4658 
Symbol 
ID8022352 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp1315676 
End bp1316728 
Gene Length1053 bp 
Protein Length350 aa 
Translation table11 
GC content65% 
IMG OID644833435 
Productinner-membrane translocator 
Protein accessionYP_002984569 
Protein GI241666210 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value0.14788 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACTTGT CGATTGCCGC CATCCTGGCG CAGGACGGCG TGACGTCGGG CGCGATCTAC 
GCGCTGCTGG CGCTGGCGCT CGTGCTGGTG TTTTCGGTCA CGCGCGTGAT CTTCATCCCG
CAAGGGGAGT TCGTCGCATA TGGCGCGCTC ACGCTGGCGG CCGTGCAGTC CAACAAGGCC
CCGCTGTCTG CCAGCCTGTT GGTGGTGCTG GGCGTGCTCA CGTTCCTTGT CGAGATGGGG
CGTACGCTGC TGCAGCCGGA ACTGCGTCTG CATGCGCTGC GCACGGGCGC CCTCTACGCG
GTGAAGTACC TGGTGTTTCC GCTGGCCATC TACGCTGCGG CCGCCGTACT GGCACCCATG
ACCTTGCCGC AGGTGGTGCA GGTGGCGCTG GCGTTGCTGA TCGTCATTCC CATGGGGCCG
ATGATCTACC GGCTGGCCTA CGAGCCGTTG GCCGAGGCCA GCACCCTGGT GTTGTTGATC
GTCTCGGTGG GCGTGCACTT TGCGATGGTC GGGCTCGGCC TGGTGATGTT CGGCGCCGAA
GGCTCGCGCA CGGATGCATT TTCCGATGCA CGATTCGACC TCGGCGCGTT GACGGTGTCC
GGCCAGAGCC TGTGGGTGGT GCTGGTGTCG GCGTTGATGA TCGTGGCCTT GTACTTCTAC
TTTGGCCGCA CCGTGTCGGG CAAGGCGTTG CGCGCAACGG CGGTGAACCG GCTGGGCGCG
CGGCTGGTCG GCATCGGCAC CACGCAGGCC GGACGACTGG CCTTCACGCT GGCTGCCGCG
TTGGGCGCGC TGTGCGGCAT CCTCATCGCC CCCATCACCA CGATTTATTA CGAGTCAGGT
TTCCTCATCG GCCTGAAGGG CTTCGTGGGT GCAATCGTTG GTGGGCTGGT GAGCTATCCG
GTTGCCGCGC TGGGCGCGCT GCTGGTGGGG CTGCTGGAGT CCTACGCTTC GTTCTGGGCT
TCGGCGTTCA AGGAGGTGAT CGTGTTTACG CTCATCCTTC CCGTGTTGCT ATGGCGCTCG
CTCACCACCA AGCATGTCGA GGAAGAGGAA TAA
 
Protein sequence
MDLSIAAILA QDGVTSGAIY ALLALALVLV FSVTRVIFIP QGEFVAYGAL TLAAVQSNKA 
PLSASLLVVL GVLTFLVEMG RTLLQPELRL HALRTGALYA VKYLVFPLAI YAAAAVLAPM
TLPQVVQVAL ALLIVIPMGP MIYRLAYEPL AEASTLVLLI VSVGVHFAMV GLGLVMFGAE
GSRTDAFSDA RFDLGALTVS GQSLWVVLVS ALMIVALYFY FGRTVSGKAL RATAVNRLGA
RLVGIGTTQA GRLAFTLAAA LGALCGILIA PITTIYYESG FLIGLKGFVG AIVGGLVSYP
VAALGALLVG LLESYASFWA SAFKEVIVFT LILPVLLWRS LTTKHVEEEE