| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4610 |
|---|
| Symbol | |
|---|
| ID | 8022298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1259530 |
|---|
| End bp | 1260672 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644833382 |
|---|
| Product | 2-aminoethylphosphonate ABC transport system, ATP-binding protein component |
|---|
| Protein accession | YP_002984522 |
|---|
| Protein GI | 241666163 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3842] ABC-type spermidine/putrescine transport systems, ATPase components |
|---|
| TIGRFAM ID | [TIGR03265] putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.51549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.957495 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGACCG TTTTTGCCAC TGTCTGCGCC CCCGTGCCCC TCCCTCAGCC TGCTACCAAC
CCGACCTCGG GTTCTGCCAC GCCGTTCCTG TCCGTGCGGC AAATCTCGCG CCGCTTTGGC
GCGTTCACGG CCCTCGACGG TGTGTCGCTG GATGTGGCGC AGGGGGAATT CGTCTGCCTG
CTGGGCCCCT CGGGCTGCGG CAAGACGACC CTGCTGCGCA TCATTGCGGG GCTGGAGGCG
CACGACGGCG GCCAGATCGT CGCCGGCGGC CGCGATATCT CCAACCTGCC GCCACGCGAG
CGTGACTACG GCATCGTCTT CCAGTCGTAC GCGCTGTTCC CCAACCTGAC GGTTGCGCAG
AACGTTGGTT ACGGGCTGGA CACCAGCAAC GGCAACCGTG CGCGCATGCA GGCGCGCGTC
TCGGAGATGC TGACCTTGGT CGGCTTGGCT GGCAGCGAGG CGAAATACCC GTCGCAGCTG
TCGGGCGGCC AGCAGCAACG CGTGGCACTG GCCCGGGCGC TGGCGCCCTC ACCGTCCTTG
TTGCTGCTGG ATGAGCCGAT GTCGGCGCTG GATGCCCAGG TGCGCGAACA CCTGCGCATC
GAGCTGCGCC GCCTGCAGCG CAAGCTGAAC GTGACCACGC TGATGGTCAC GCACGACCAG
GACGAGGCCA TGGCGATGGC CGATCGCATC GCCGTCATGT CGAACGGCCG CATTGAGCAG
ACCGGCTCGC CGACGGAGAT CTATTCGCGC CCGGCCACCG CGTTTGTCGC AGGCTTTGTC
GGCCAGGCCA ACTGGCTGCC GCTGGAGCGC GCGGAAGACG GCACGCCCAC GCTGGCCGGC
CAACCGCTGC TGCTGGATCC GGCTTTCGCA GACAGTGCCT CGGCTCCAGG CCGGCTGTTC
TGCCGCCCCG AGGCCGTCAC GCTGCACCCC GACGACGACG CCCCCAACCG CCATCTCGCC
CGCGTGGTCG ACCAGATCTA CCTTGGCAGC CGCACGCGCG TGACGCTGTC GATCGATGGC
CTGACCGACG CACCGCTGGT GGCCGAAGTG GCATCGAGCG CGCTGCAAGC CGGCCGCAAC
GGCCTGGGCG ACAGCAAGCT CTGGATCGCG CTGGAGCGCG ACGGCCTGCG CGTGTATGCC
TGA
|
|---|
| Protein sequence | MATVFATVCA PVPLPQPATN PTSGSATPFL SVRQISRRFG AFTALDGVSL DVAQGEFVCL
LGPSGCGKTT LLRIIAGLEA HDGGQIVAGG RDISNLPPRE RDYGIVFQSY ALFPNLTVAQ
NVGYGLDTSN GNRARMQARV SEMLTLVGLA GSEAKYPSQL SGGQQQRVAL ARALAPSPSL
LLLDEPMSAL DAQVREHLRI ELRRLQRKLN VTTLMVTHDQ DEAMAMADRI AVMSNGRIEQ
TGSPTEIYSR PATAFVAGFV GQANWLPLER AEDGTPTLAG QPLLLDPAFA DSASAPGRLF
CRPEAVTLHP DDDAPNRHLA RVVDQIYLGS RTRVTLSIDG LTDAPLVAEV ASSALQAGRN
GLGDSKLWIA LERDGLRVYA
|
|---|
| |