Gene Rpic12D_4584 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4584 
Symbol 
ID8022272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp1229599 
End bp1230951 
Gene Length1353 bp 
Protein Length450 aa 
Translation table11 
GC content62% 
IMG OID644833356 
Productd-galactonate transporter 
Protein accessionYP_002984496 
Protein GI241666137 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2271] Sugar phosphate permease 
TIGRFAM ID[TIGR00893] d-galactonate transporter 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.960578 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones23 
Fosmid unclonability p-value0.440179 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACATCA AAGCCCCCGC AGTGGGAGCA CAGGCCGTGC CGCGCGCTGA GCGCATGAGC 
CGCGTGCGTT TCGTGATCCT CGCGATGCTG TTTATCGTGA CGACCATCAA CTACGCCGAT
CGGGCGACCA TCTCCATTGC CGGCTCGGCC ATGCAAAAAG AACTCGGCAT CGATGCCGTG
TCGCTTGGCT ATATTTTTTC GGCGTTTGGC TGGGCTTATG TGATCGCGCA GATTCCGGGC
GGCTGGCTGC TCGACCGCTT CGGTTCGAAG CGCGTTTACA CGTTCAGCAT TTTGCTGTGG
TCGCTGTTCA CGCTGGCGCA GGGTGCCATC GGTTTCTTTA CCGGCGCCGC CGCCATCGTC
ATGGTGTTCT GCCTGCGCTT CCTGGTGGGG GCGGCAGAGG CGCCGTCCTT CCCGGCGAAC
AGCCGTATCG TGGCGGCGTG GTTTCCGGCC AATGAGCGCG GCACTGCAGC GGCCATCTTC
AACTCTGCGC AATATGCCGC CACGGTGGTG TTTGCCCCGC TGATGGCCTG GCTGGTGCAC
GCGTTCGGCT GGCATCACGT GTTTATCGTG ATGGGCGTGA TCGGCATTGT CATGGCGGTC
GTGTGGAGAG CCTTCGTACA CGAACCGAAA GACCACCCGG GCGTCAACCG CGCCGAAATC
GAGTACATCG AAGCCGGCGG CGGCCTGGTC AACATGGACC GTGCCGGCGT GGCCAAGGCT
GAGGGTCCGA AACTCGGCTA CGTGAAGCAG CTCCTGCAGA ACCGCATGCT GATGGGGGTG
TACATCGCGC AGTACTGCAT CAATGCGCTC ACGTACTTCT TCATCACGTG GTTCCCGGTG
TATCTGGTGC AGGCGCGCGG CATGTCGATC CTGAAGGCGG GCTTCGTCGC GTCGATTCCG
GCGGTGTGCG GCTTCCTGGG CGGCATTCTG GGCGGGATCA TCTCTGACGC GCTGCTCCGG
CGTGGTGCCT CGCTTTCGAT GGCGCGCAAG GTACCCATCG TGCTGGGCAT GCTGCTTTCC
ATGACCATGG TGATCTGCAA CTACGTCGAT GCGCAGGCCG TCGTCGTGGC CGTGATGGCG
TTGTCGTTCT TCGGCAAGGG CCTCGGTGCG CTGGGCTGGG CAGTGAACTC CGATACGGCG
CCCAAGCAGA TTGCGGGCTT ATCGGGCGCG CTGATGAACA CCTTCGGCAA CCTGTCGAGC
ATCACCACGC CCATCGCGAT CGGTTACATC GTCAACACCA CGGGCTCGTT CAACGGGGCG
CTTGTGTACG TGGGGATCCA CGCCGCGGTT GCCATCGTCT GCTACCTGTT CATGGTGGGC
GAGATCAAGC GTGTGGAACT GAAGCCGCTG TAA
 
Protein sequence
MDIKAPAVGA QAVPRAERMS RVRFVILAML FIVTTINYAD RATISIAGSA MQKELGIDAV 
SLGYIFSAFG WAYVIAQIPG GWLLDRFGSK RVYTFSILLW SLFTLAQGAI GFFTGAAAIV
MVFCLRFLVG AAEAPSFPAN SRIVAAWFPA NERGTAAAIF NSAQYAATVV FAPLMAWLVH
AFGWHHVFIV MGVIGIVMAV VWRAFVHEPK DHPGVNRAEI EYIEAGGGLV NMDRAGVAKA
EGPKLGYVKQ LLQNRMLMGV YIAQYCINAL TYFFITWFPV YLVQARGMSI LKAGFVASIP
AVCGFLGGIL GGIISDALLR RGASLSMARK VPIVLGMLLS MTMVICNYVD AQAVVVAVMA
LSFFGKGLGA LGWAVNSDTA PKQIAGLSGA LMNTFGNLSS ITTPIAIGYI VNTTGSFNGA
LVYVGIHAAV AIVCYLFMVG EIKRVELKPL