| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4579 |
|---|
| Symbol | |
|---|
| ID | 8022267 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1223420 |
|---|
| End bp | 1224721 |
|---|
| Gene Length | 1302 bp |
|---|
| Protein Length | 433 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644833351 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002984491 |
|---|
| Protein GI | 241666132 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2271] Sugar phosphate permease |
|---|
| TIGRFAM ID | [TIGR00893] d-galactonate transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.571903 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACCCA TCAAAGGCTT GCGCTGGTGG ATCATCGGCC TCGTACTCAG CGGCCTGATC
ATGAACTACC TGGCGCGTAA TGCGCTGGCG GTGGCGGCGC CTGAAGTCAA CAAGGTGCTG
AACATCAGCA CGCAGCAGTA CGGCTACATC GTCGCGGCAT TCCAGGCGGC CTACATGGTG
ATGCAGCCGG TGGCGGGCTA TGTGCTCGAC GTGCTGGGCA CCAAGCTGGG TTTTGCGCTG
TTTGCGGCGG CGTGGTCGGT GGTCTGCCTG CTGCACAGCA CGGCCGGCAG CTGGCTGTCG
CTGGCGGCGT TCCGCGCGAT GCTGGGGATG ACGGAGGCGG CGGGTTTCCC GTCGGCGCTG
CGGGCAACGG CGGAGTGGTT CCCGGCCAAG GAGCGGTCGA TTGCAACCGG CTGGTTCAAC
ATCGGCTCGT CCGTGGGGGC GGTGGTGGCG CCTCCTCTGG TGGTCTGGTG CATTTTGCAC
GGCAACTGGC GCTTTGCCTT TGCCGTGATC GGCGGCATCG GGCTGGTGTG GAGCGTGCTG
TGGTTCCTGC TGTATCGCGT GCCGGCCAAA CACCATCGCC TGTCGGAGGA AGAGCGCAAC
TACATCCGCG CCGGCCAGGA AACGCCGGAC GACGACGCCA ACGTGCCCAA GCCTTCATGG
GGCAAGATCG TCAGCGGCCG CCGCTTCTGG GGTATCGCCA TTCCGCGCTT TCTGTCGGAG
CCGGCGTGGC AGACGTTCAA CTATTGGATT CCGCTCTATA TGGCTACCGA GCGCCATATG
AACCTGAAGG AGATCGCGCT CTTTGCGTGG CTGCCGTTCC TGGCGGCGGA TGTGGGCTGC
GTGCTGGGCG GCTACCTGGC GCCATGGTTC CAGAGGCGGT TCTCGGTGTC GCTTGTCACG
TCGCGCAAGC TCGTGATGGT GACGGGCTGC CTGTGCATGA TCGGCCCCGC CTGCATTGGA
CTGGCGACGA GTCCATACAC GGCGATTGCG CTGTTCTGCG TGGGCGGTTT CGCGCACCAG
ACGCTCTCCG GCGCGCTATA CACGCTCACG TCGGACATGT TCGGCAAGCA TGAAGTCGGC
ACGGCCGTGG GGCTGGCGGG CATGTCGGGT TACATGGGCG GCATGCTGTT CTCCCTGGCG
GTCGGTACGC TCGCAACCAC CATCGGCTAC AACCCGCTGT TCGTGGCGCT GGCCGTGTTC
GACATCGTGG CCGCCATCCT CGTGTGGACG TTGCTCAACG ACAAGCAGGC CCGCCCCGTG
CCGATGCAGC CCGGCGGGAC GGCGCCCAGT ACTGCGGCCT GA
|
|---|
| Protein sequence | MKPIKGLRWW IIGLVLSGLI MNYLARNALA VAAPEVNKVL NISTQQYGYI VAAFQAAYMV
MQPVAGYVLD VLGTKLGFAL FAAAWSVVCL LHSTAGSWLS LAAFRAMLGM TEAAGFPSAL
RATAEWFPAK ERSIATGWFN IGSSVGAVVA PPLVVWCILH GNWRFAFAVI GGIGLVWSVL
WFLLYRVPAK HHRLSEEERN YIRAGQETPD DDANVPKPSW GKIVSGRRFW GIAIPRFLSE
PAWQTFNYWI PLYMATERHM NLKEIALFAW LPFLAADVGC VLGGYLAPWF QRRFSVSLVT
SRKLVMVTGC LCMIGPACIG LATSPYTAIA LFCVGGFAHQ TLSGALYTLT SDMFGKHEVG
TAVGLAGMSG YMGGMLFSLA VGTLATTIGY NPLFVALAVF DIVAAILVWT LLNDKQARPV
PMQPGGTAPS TAA
|
|---|
| |