Gene Rpic12D_4542 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4542 
Symbol 
ID8022230 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp1181416 
End bp1182009 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content62% 
IMG OID644833315 
ProductRhomboid family protein 
Protein accessionYP_002984455 
Protein GI241666096 
COG category[R] General function prediction only 
COG ID[COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.00483276 
Fosmid HitchhikerNo 
Fosmid clonabilitydecreased coverage 
 

Sequence

Gene sequence
ATGATCAAGC TGCTCATCCT CATCAACGTG GCGGCGTTCG TTGCAGAAGT CTTTGCGGGG 
GACGCGTTGC TACGAACCTT TGCGCTCTGG CCACTCGGCG TATCTGGCGG CGGCGTGGTG
GGAGGATTCC TGCCGTGGCA GCCGCTGACA TACGCTTTCC TGCACGCAAA TGGCGCGCAT
CTGGCGTTCA ACATGTTCGG CCTCTACCTG TTCGGGCGCG ACGTCGAACG TACCGTGGGT
GCGCCTCGGA CTTGGCAGCT CTATCTGTCC AGCATCTTGA GTGCAGCCTT CGCGCAACTC
GCTTTTACGG CCTTGAGCAT TCTTCCGGCG GGGCCGGTCA TTGGCGCGTC CGGGGGCGTA
TTCGGACTGC TTCTCGCGTA TGCCGTCCTG TTTCCCAATC GCATCATCGT TCCGTTGATC
CCGCCCATCC CGATGCCGGC GTGGGTGTTC GCGACGCTCT ATGCGATTGT GGAGCTGACC
CTCGGCGTGA GCGGCACCGA AGTCAATGTT GCGCACTTTG CGCATCTGGG CGGCATGGCG
GGCAGCGGGG TGCTGCTTTG GCACTGGCTG CACGGCACCC CACGCGAGTC ATAG
 
Protein sequence
MIKLLILINV AAFVAEVFAG DALLRTFALW PLGVSGGGVV GGFLPWQPLT YAFLHANGAH 
LAFNMFGLYL FGRDVERTVG APRTWQLYLS SILSAAFAQL AFTALSILPA GPVIGASGGV
FGLLLAYAVL FPNRIIVPLI PPIPMPAWVF ATLYAIVELT LGVSGTEVNV AHFAHLGGMA
GSGVLLWHWL HGTPRES