Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4542 |
Symbol | |
ID | 8022230 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 1181416 |
End bp | 1182009 |
Gene Length | 594 bp |
Protein Length | 197 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 644833315 |
Product | Rhomboid family protein |
Protein accession | YP_002984455 |
Protein GI | 241666096 |
COG category | [R] General function prediction only |
COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.00483276 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
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Sequence |
Gene sequence | ATGATCAAGC TGCTCATCCT CATCAACGTG GCGGCGTTCG TTGCAGAAGT CTTTGCGGGG GACGCGTTGC TACGAACCTT TGCGCTCTGG CCACTCGGCG TATCTGGCGG CGGCGTGGTG GGAGGATTCC TGCCGTGGCA GCCGCTGACA TACGCTTTCC TGCACGCAAA TGGCGCGCAT CTGGCGTTCA ACATGTTCGG CCTCTACCTG TTCGGGCGCG ACGTCGAACG TACCGTGGGT GCGCCTCGGA CTTGGCAGCT CTATCTGTCC AGCATCTTGA GTGCAGCCTT CGCGCAACTC GCTTTTACGG CCTTGAGCAT TCTTCCGGCG GGGCCGGTCA TTGGCGCGTC CGGGGGCGTA TTCGGACTGC TTCTCGCGTA TGCCGTCCTG TTTCCCAATC GCATCATCGT TCCGTTGATC CCGCCCATCC CGATGCCGGC GTGGGTGTTC GCGACGCTCT ATGCGATTGT GGAGCTGACC CTCGGCGTGA GCGGCACCGA AGTCAATGTT GCGCACTTTG CGCATCTGGG CGGCATGGCG GGCAGCGGGG TGCTGCTTTG GCACTGGCTG CACGGCACCC CACGCGAGTC ATAG
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Protein sequence | MIKLLILINV AAFVAEVFAG DALLRTFALW PLGVSGGGVV GGFLPWQPLT YAFLHANGAH LAFNMFGLYL FGRDVERTVG APRTWQLYLS SILSAAFAQL AFTALSILPA GPVIGASGGV FGLLLAYAVL FPNRIIVPLI PPIPMPAWVF ATLYAIVELT LGVSGTEVNV AHFAHLGGMA GSGVLLWHWL HGTPRES
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