| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4510 |
|---|
| Symbol | |
|---|
| ID | 8022198 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 1147758 |
|---|
| End bp | 1149314 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 644833284 |
|---|
| Product | thymidine phosphorylase |
|---|
| Protein accession | YP_002984424 |
|---|
| Protein GI | 241666065 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0213] Thymidine phosphorylase |
|---|
| TIGRFAM ID | [TIGR02645] putative thymidine phosphorylase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00125183 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 0.427324 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTGTCA TGACCACCGT CTCCATGCCC CCAGTTGACG CGTCCATTGC CCCGCTGGGA
TGCCTCAGGT TCAAGGCGCT TGGCATTGAC ACGTGGCAGG AGCACGTCAT CTACATGCAC
CCTGACAGCG CGATCTGCCG GTCCGAGGGC TTTGCCGCGC AGGCCCGCGT AGAAGTCCAG
ATCGGGCAGC GATCGCTGAT CGCCACGCTG AACCTCGTGG GCTCGGGGTT GCTGGAAAAG
CATGAGGTGA GCCTGTCAGC CAGCGCGGTC GATTCGTTGA TGGCGCGCCC GGGTGACGAA
GTCTGCGTCA GGCACGCGCC GTCGCTTGAG TCGCTGCGCG CCCTGCGGGC CAAGATCTAT
GGCGGGCATC TGGACGCCAA GCAATTGCAG GAGATCATTG CTGACATCTC GCATGAGCGT
TATGCCGATG TCCATATCGC GGCATTCCTG AGCGCCTGCG CATCCAGCCG CATGACCATC
AAGGAAACCA TCGACCTCAC ACAAGCGATG GTCGACTCCG GAGAGCGTCT GCAGTGGGAC
CGCGCGGTCG TGGCAGACAA GCACTGCGTG GGCGGTCTGC CCGGCAATCG CACCAGCCCT
ATCGTCGTTG CCATCTGTGC GGCGGCGGGG CTGCTGCTGC CTAAAACGTC GTCACGCGCC
ATCACCTCGC CTGCGGGTAC CGCCGACATG ATGGAAACGC TCACCCGCGT CAACCTGAGC
GCGGCAGAGT TGCGATGCGT TGTGGGGCAG GTTGGGGCAT CGCTCGCGTG GGGCGGGGCA
TTGAGTCTCA GCCCGGCGGA CGACGTCTTG ATTCGAGTGG AAAGGGCACT GGACGTCGAC
AGCGATGCCC AGCTTGTGGC GTCCATTCTC TCCAAGAAGA TCGCGGCCGG GTCCACCCAT
GTGTTGATCG ACGTGCCTGT GGGGCCGACG GCCAAAGTCC GCAGTGTCGA AGACCTTGAA
CGCCTTGAAA TGCTGCTCAA GCGTGTGGCG CAAGCTTTTG GGGTGCAGGT GCTGATGGTG
CGCACGGATG GCGCGCAGCC CGTTGGCCGC GGGATCGGCC CTGCGCTGGA AGCAAGAGAC
GTTCTGGCTG TACTCCAACG GACCCCTACC GCGCCGTTCG ACTTGCGGGA ACGGTCTCTA
TTGCTGGCCG GCGCATTGCT GGAGTTTTGC GGTACGGCTG TTGCCGGAAC GGGGCTTGTC
ATGGCAACCG ACCTGCTGGA CAGCGGTGCT GCATGGCGAA AATTCGAAGC GATCTGCGAG
GCGCAGGGTG GCTTGCGCAT CCCCGGAGAA GCCGTGTTCC GCCGCGACGT CGTTGCCGAG
CAAAATGGAA TCGTCACCCA CATCGACAAC CGCCACCTTG CCCGCATTGC GAAGCTTGCG
GGCGCGCCGA TGCGTCAAGT CGCGGGCGTA CAGATGCGTG TGCGACTGCG GGATCAAGTG
AATGTTGGGC AACCGCTGTT CACGATCCAC GCGCAGGCCT CGGGCGAGCT GGAGTATTCG
TCGGCATATG CGTTGACGCA TGCTGTGGTG GGACTGTCTC CGATGGGAAT CGGTTGA
|
|---|
| Protein sequence | MPVMTTVSMP PVDASIAPLG CLRFKALGID TWQEHVIYMH PDSAICRSEG FAAQARVEVQ
IGQRSLIATL NLVGSGLLEK HEVSLSASAV DSLMARPGDE VCVRHAPSLE SLRALRAKIY
GGHLDAKQLQ EIIADISHER YADVHIAAFL SACASSRMTI KETIDLTQAM VDSGERLQWD
RAVVADKHCV GGLPGNRTSP IVVAICAAAG LLLPKTSSRA ITSPAGTADM METLTRVNLS
AAELRCVVGQ VGASLAWGGA LSLSPADDVL IRVERALDVD SDAQLVASIL SKKIAAGSTH
VLIDVPVGPT AKVRSVEDLE RLEMLLKRVA QAFGVQVLMV RTDGAQPVGR GIGPALEARD
VLAVLQRTPT APFDLRERSL LLAGALLEFC GTAVAGTGLV MATDLLDSGA AWRKFEAICE
AQGGLRIPGE AVFRRDVVAE QNGIVTHIDN RHLARIAKLA GAPMRQVAGV QMRVRLRDQV
NVGQPLFTIH AQASGELEYS SAYALTHAVV GLSPMGIG
|
|---|
| |