| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4491 |
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| Symbol | sdhA |
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| ID | 8022179 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 1125701 |
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| End bp | 1127479 |
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| Gene Length | 1779 bp |
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| Protein Length | 592 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644833265 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_002984405 |
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| Protein GI | 241666046 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.00238917 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGGTCGCAG TCAAGACTGG GCTGCCGCGC CGCAAATTCG ACGTCGTGAT CGTCGGTGCG
GGCGGTTCGG GCATGCGCGC ATCGCTGCAG CTGGCAGAAG CCGGCCTCTC CGTGGCCGTG
CTGTCCAAGG TGTTCCCCAC CCGCTCGCAC ACCGTTGCGG CGCAGGGTGG TATCGGTGCT
TCGCTGGGCA ACATGAGCGA AGACAATTGG CACTATCACT TCTACGACAC CGTCAAGGGT
TCCGACTGGC TCGGCGACCA GGACGCGATC GAATTCATGT GCCGCCAGGC GCCGAACGTG
GTCTATGAAC TGGAACACTT CGGCATGCCG TTCGACCGCA ACGCCGACGG CACCATCTAC
CAGCGTCCGT TTGGCGGCCA TACGTCGAAC TACGGCGAGA AGCCGGTGCA ACGCGCTTGC
GCCGCCGCCG ACCGTACCGG TCACGCGTTG CTGCACACGC TGTATCAGCG CAACGTCAAG
GCCAAGACCC ACTTCTTCGT CGAATGGATG GCGCTGGATC TGATCCGCGA TCAGGACGGC
GACGTGCTGG GCGTGACCGC GCTGGAGATG GAAACCGGCG AGGTCTACAT CCTCGAAGCC
AAGACGACGC TGTTCGCCAC GGGCGGTGCA GGCCGGATCT ACGCGGCTTC CACCAACGCC
TTCATCAACA CGGGTGACGG CCTGGGCATG GCGGCACGCG CAGGCGTGCC GCTGGAAGAC
ATGGAGTTCT GGCAGTTCCA CCCGACTGGC GTGGCCGGCG CGGGCGTGCT GATCACGGAA
GGCGTGCGCG GCGAAGGCGG CATCCTGCGT AACAAGGATG GCGAGCGCTT CATGGAGCGC
TATGCCCCGA CGCTGAAGGA TCTGGCGCCG CGTGACTTCG TGTCGCGCTC GATGGACCAG
GAAATCAAGG AAGGCCGCGG CTGCGGTCCG AACGGCGACT ACGTGCTGCT CGACCTGACG
CACGTCGGCG CCGAGACCAT CATGAAGCGC CTGCCGTCGA TTCGCGAGAT CGGCCTGAAG
TTCGCCAACG TCGACGCCAT CAAGGAACCG ATTCCCGTGG TGCCGACCAT CCACTACCAG
ATGGGTGGCA TTCCGACGAA CTATCACGGC CAGGTGGTGG TGCCGAAGAA CGGCAACCCG
AACGAGGTCA TCAACGGCTT CTACGCGATC GGCGAATGCT CGTGCGTGTC GGTGCACGGC
GCCAACCGCC TGGGCACGAA CTCGCTGCTC GACCTGGTGG TGTTCGGCCG TTCGGCGGGT
AACCACATCA TTGCGCAGAA CCTGAAGAAC CGCGAGCACA AGCCGCTGCC GGCCGACGCC
GCCGACCGCG CGCTGTCGCG CCTGGCCAAG CTCGATTCGT CGAGCTCGGG CGAGTACGCG
CAGGACGTCG CCAACGACAT CCGCCGCAAC ATGCAGTCGC ACGCTGGCGT GTTCCGTACG
CAGAAGCTCA TGGATGAAGG CGTCGAGCGC ATCCTGGAAG TGGCCGAGCG TGCTGGCAAC
ATCCACCTGA AGGACAAGTC CAAGGTGTTC AACACCGCGC GCGTCGAAGC GCTGGAAGTG
GCCAACCTGG TGGAAGTGGC GAAGGCGACG ATGGTGTCGG CTGCCGCCCG CAAGGAATCG
CGCGGCGCAC ACGCCCACAG CGACTTCCCG AACCGCGACG ATGAAAACTG GATGAAGCAC
TCGCTGTGGT ATTCCGAAGG CAACCGCCTG GACTACAAGC CCGTGCAGTT GAAGCCGCTG
TCGGTGGAAT CGGTGCCGCC CAAGGCGCGT ACGTTCTAA
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| Protein sequence | MVAVKTGLPR RKFDVVIVGA GGSGMRASLQ LAEAGLSVAV LSKVFPTRSH TVAAQGGIGA
SLGNMSEDNW HYHFYDTVKG SDWLGDQDAI EFMCRQAPNV VYELEHFGMP FDRNADGTIY
QRPFGGHTSN YGEKPVQRAC AAADRTGHAL LHTLYQRNVK AKTHFFVEWM ALDLIRDQDG
DVLGVTALEM ETGEVYILEA KTTLFATGGA GRIYAASTNA FINTGDGLGM AARAGVPLED
MEFWQFHPTG VAGAGVLITE GVRGEGGILR NKDGERFMER YAPTLKDLAP RDFVSRSMDQ
EIKEGRGCGP NGDYVLLDLT HVGAETIMKR LPSIREIGLK FANVDAIKEP IPVVPTIHYQ
MGGIPTNYHG QVVVPKNGNP NEVINGFYAI GECSCVSVHG ANRLGTNSLL DLVVFGRSAG
NHIIAQNLKN REHKPLPADA ADRALSRLAK LDSSSSGEYA QDVANDIRRN MQSHAGVFRT
QKLMDEGVER ILEVAERAGN IHLKDKSKVF NTARVEALEV ANLVEVAKAT MVSAAARKES
RGAHAHSDFP NRDDENWMKH SLWYSEGNRL DYKPVQLKPL SVESVPPKAR TF
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