Gene Rpic12D_4483 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4483 
Symbol 
ID8022171 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp1118491 
End bp1118973 
Gene Length483 bp 
Protein Length160 aa 
Translation table11 
GC content49% 
IMG OID644833257 
ProductCupin 2 conserved barrel domain protein 
Protein accessionYP_002984397 
Protein GI241666038 
COG category[S] Function unknown 
COG ID[COG1917] Uncharacterized conserved protein, contains double-stranded beta-helix domain 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0000000935764 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGAACACGG ACCCCCAACA GCGGCGCGTT GCGCCGCCGT TTCGGGCCGG TTATCGGCAA 
CGTAGAACTC TCGGATACAG TTGTTCTGTA ATAACTTCTC AAGCCAAATT GATTTTTGGA
GTGGATATGG AAATGGAATC AAGAATATTT TCGGTAACAG AATATATTCG TCCGTCTGAC
GGCGAACCAA TTCGTTCAGT GGTTCTGGAA ACCAAGGACT CAGCAGTTGT TGTTTGGCAT
GCCCATCCTG GGCAAGAAAT AACCGCTCAT GTTCACCCGG ACGGCCAAGA TACTTGGACG
GTTATCTCTG GAGAGGCTGA GTATTACCAA GGAGGCGGCA AAGTCGCTCA TCTAAAGGCT
GGAGATATTG CCATAGCAAA ACCTGGCCAA GTGCATGGCG CTCTAAATAC TAGTCCAGTG
CCGTTTGTAT TTGTCTCAGT GGTTGCATCT GGCAACGCGG GTTTTGCGTT GGCTGAAAAA
TAG
 
Protein sequence
MNTDPQQRRV APPFRAGYRQ RRTLGYSCSV ITSQAKLIFG VDMEMESRIF SVTEYIRPSD 
GEPIRSVVLE TKDSAVVVWH AHPGQEITAH VHPDGQDTWT VISGEAEYYQ GGGKVAHLKA
GDIAIAKPGQ VHGALNTSPV PFVFVSVVAS GNAGFALAEK