| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4452 |
|---|
| Symbol | |
|---|
| ID | 8022140 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 1090745 |
|---|
| End bp | 1092241 |
|---|
| Gene Length | 1497 bp |
|---|
| Protein Length | 498 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644833226 |
|---|
| Product | Amine oxidase (flavin-containing) |
|---|
| Protein accession | YP_002984366 |
|---|
| Protein GI | 241666007 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1231] Monoamine oxidase |
|---|
| TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.383006 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.183412 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGATT TTGCAAAGAA AGGCGATGAG GCGCCGGAGG CGGCAGCGCT CACGCGGCGT
GGCTTTCTCG GCATGGCCGC ATCGGTGACA GCTGCGGCGA CGGCGGCGGT ATTGCCCAAG
GTGGCGAGCG CCGCTGTTGC CGCCGGCGAT GAGCGCGACG TGCTCGAGGT GGCCATCATC
GGTGCCGGGC TGGCCGGCCT GACCGCTGCA CGTGACCTGA AGCGTGCGGG GTGCGAATCC
TTCGTGGTGC TGGAGGCACG CGACCGTGTT GGCGGACGCA CCCTCAACCA CGATCTCGGC
AAAGGCTACT TCTCGGAATC GGGCGGCCAA TGGATCGGGC CGGGCCAGAC CGCGGTTGCC
GATCTGGCTC GCGAGCTGGG TGTTGGTACG TTTCCCACCT ACTGGCAGGG CAAGACGGTG
ATGCTGGCCG GTGGCGCGCG TGCCGCAGTC GATACCGAGG GCGGCTTCGG CACGGATCCG
AAGATTGCAC ATGAACTCGA GGAACTGGCC AAAAGCGTGC CGTGTGGCGC GCCGTGGAAA
TCGCCGCGCG CCGCCGAGTT CGACGCGATG TCGGTCGGCG ACTGGCTGGT GAAAAAGAAC
ATCGCAAACG CAGACCAGAT CGGTTGGTCG ACCGGCTTGG CGATCACGGG TGGCGCCTCG
CCGGCGCGAC TGTCGCTGCT GCACTGGTTG TCGATGGTCA ATTCAGCCGA ATGCAACTAC
GACCGGCTCG AAGCGGTTAA GGACGGCGCG CAAGGCACCC GACTCTCGGG CGGCTCGCAG
ATTCTGTCGA TCAAGATGGC GGAAGCGTTG GGTAACAAGG TCCGACTGTC GAGCCCCGTG
CTGCGCATTG AGAACTGGCA GAACGGACCG GTCGCCATTC ATACCGCCAA TGGTGTGGTC
CGTGCGCGTA ACGTGATCGT CGCGCTCGCG CCGATGTTGT GCAATCAGAT CGCCTTCGAC
CCGCCGCTGC CGGAGAAACG CCGCGAAATG CAGCGCCGCT GGCCGGCGTT TGCGCCCGGA
CGCAAGACGA CGCACGTCTA CAAGAAAGCG TTCTGGCGCG ACAAGGGCCT GAACGGCTGG
ATTTTTCAAC CGGGGGGGCC GGTGCTTTGG GCGTACGACA ACTCGCCGGA GGATGTCTCG
TTCGGCGTGA TCAACGCGTT CGTGCACATC AGCATGCTGC CGGCCGATCC GAAGGAGGCC
GAGGCCCAGC TCTCGCAGAT CTATGCCGAG GCGTTTGGCG ATGAAGCGCT GCACCCCATC
GCATTCCATC AGCGTGATTG GCTCAAGGCA GACAAATGGA CGCTGAGCTG CGTGTCGCCG
ATGCCGCCCG GTTTTCTCAC CACGTACGGT GAAGCCCTGC ATCCGTCTGT TGGCAAGCTG
ATCTGGTCGG GCACGGAAAC GGCGGAAATC TGGGCGGGTT ACATGGACGG TGCGGTGCGT
TCCGGCCACA AGGCAGCGTT GCAGGCGCTA CAGGCCGTAG CCGGGGGGAA GGCTTGA
|
|---|
| Protein sequence | MDDFAKKGDE APEAAALTRR GFLGMAASVT AAATAAVLPK VASAAVAAGD ERDVLEVAII
GAGLAGLTAA RDLKRAGCES FVVLEARDRV GGRTLNHDLG KGYFSESGGQ WIGPGQTAVA
DLARELGVGT FPTYWQGKTV MLAGGARAAV DTEGGFGTDP KIAHELEELA KSVPCGAPWK
SPRAAEFDAM SVGDWLVKKN IANADQIGWS TGLAITGGAS PARLSLLHWL SMVNSAECNY
DRLEAVKDGA QGTRLSGGSQ ILSIKMAEAL GNKVRLSSPV LRIENWQNGP VAIHTANGVV
RARNVIVALA PMLCNQIAFD PPLPEKRREM QRRWPAFAPG RKTTHVYKKA FWRDKGLNGW
IFQPGGPVLW AYDNSPEDVS FGVINAFVHI SMLPADPKEA EAQLSQIYAE AFGDEALHPI
AFHQRDWLKA DKWTLSCVSP MPPGFLTTYG EALHPSVGKL IWSGTETAEI WAGYMDGAVR
SGHKAALQAL QAVAGGKA
|
|---|
| |