| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4393 |
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| Symbol | |
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| ID | 8022081 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | - |
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| Start bp | 1023596 |
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| End bp | 1026691 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 644833168 |
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| Product | heavy metal efflux pump, CzcA family |
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| Protein accession | YP_002984308 |
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| Protein GI | 241665949 |
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| COG category | [P] Inorganic ion transport and metabolism |
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| COG ID | [COG3696] Putative silver efflux pump |
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| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.421403 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 0.548372 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCTTCA ACCCCATCGC GGGCATTCTC AAGCGGCGGC TGCTGATTGT CTTCCTGGCT
GTCGCGTTGC TGGTGGCTGG CGTGCTGTCG TTCCGCGAGC TGCCACTGCA GGCGTATCCG
GGCGTGGCAC CGCTGTCGGT GCAGGCCATC ACGCAGTGGC CCGGCCGCAG CACGACCGAA
GTCGAGCAGC AGATCACCAT CCCGATTGAA AACGCACTAG CCGGCGTGCC GGACGTGCAG
TCGTTCCGCT CGGTATCGCT GTTCGGCCTG TCGGTGGTGA CGCTCAAATT CAAGGAAGGC
ACCGATAGCT TCAAGGCGCG GCAGAACTTT TCGCAGTATC TGGCGAGCGC CAACCTGCCG
ACGGGCGTGC AGTCTTCACT GAGCCCCGAC TCGGACGCCA CCGGCGAGAT CATGCGCTTT
CGCCTCGAGG GCGATGGCGT CGACCTCACC ACGCTCAAGA GCTACCAGGA CTACGACATC
TCCAAGGGGC TCAAGCACGT GCAGGGCGTG GCCGATGTCA GCTCCTTCGG TGGCAAGGTG
AAGGAGTACC ACATCGTCCC ATCGCCGGCG AAACTGCAGT CGTACGGCAT CACGCTGTCG
CAGCTCATCA CGGCCATCGG CAACGCCAAC AACAACACCG GCGGCAACCT GCTGCGCGAT
GGCGAGCAAC AGTTCGTCGT GCGCGGCGTG GGCCTGCTGC AGACGGTGGA CGACATCCGC
AACGTGGTGG TCAACACCAA CAATGGCGTG CCGGTGCGCG TGCGCGATAT TGCCGAAGTG
GAAGTCGGGA ACGTGCAGCG TCTGGGCCAG GTGCAATACA ACGATCAGCC CGACGTGGTG
GAAGGCATCG TGCTGCTCAA GCGCGACGCC AACGCCACCG AGGTGCTGGC CAAGGTGCGC
GAGAAGGTGG CGGAGCTGAA CAACGGCGTC CTGCCCAAGA GCATTCAAGT CAAGCCGTTC
TACGACCGCC AGGTGCTGCT CGACATCACC ATGGGCACGG TCGAACACAC ACTGGTGGTG
GGAATCTCGC TGGTGCTGGC GGTGTTGTTC GTCTTCCTGG GCAACTTCCG GGCGGCGGCC
GTGGTGGCGG CGGTGATTCC GCTGGCGCTG TGCGTGTCGT TCATCAGCAT GGAGCACTTC
CATGTGCCGG CCAACCTGAT CTCGCTCGGG GCGATCGACT TTGGGGTGAT CGTCGACGCG
GCCGTGATCG TGATGGAAAA CATCATGCGG CACCTCGAAG AAGGCGCCGA GAAGCTCGAA
GACGCGATCA TCAAGGCGAC CAACGAAGTG CAGCGCGCGA TGATTTTTTC CACCGGCATC
ATCATCGTGG CGTATTCCCC GCTGTTCTTC ATCGGCGGGG TGGAAGGCAT CATCTTCAAG
CCAATGGCCT TCACGATGGG CTTTGCCCTG ATGGCGTCGA TCGTGCTGAG CCTGACGTTC
GTGCCGGCTA CCACGTCGTT CGTCTTCGGC AAAACGCTGC ATCCGCATTC GCCGGCCTTT
ATTGCGGCGA TTCTGCGCTG GTACAAGCCA TTGCTGCGCA AGCTCATTGC ACGCCCGATG
GCCGTCTTTG CCACGGCCAT TACGGCGCTA TTGCTGACGC TGTACAGCGC CACGTTCCTC
GGTACGGAGT TCCTGCCCAC GCTGGAAGAA AACAACCTGT GGCTGCGCAT CACGCTGCCC
AATACGGTGG ACCTGGATTA CTCCGCGTCG GTGGCCAACG ACTTGCGTAT ATACTTCACC
AAGCAGCCGG AGATCAAGCA GGTTTCGGTG CAGATTGGCC GCCCGGACGA CGGCACCGAC
TCTACCGGCG TATTCAACCA GGAATACGGC CTGTACTTCG CACCGCCCGA CCAGTGGGAG
GCCGGCATGA CCAAGGGCAA GCTGGTCGAG CGCCTGTCGA AGCATCTGGA GAAGATTCCC
GGCATCGAAT ACAACTTCTC GCAATACATC CAGGACAACG TGGATGAGGC GCTCTCGGGC
GTGAAGGGCG AGAACTCGGT CAAGCTGTTT GGCAATGACC TGAACATGCT CGAAGCCAAG
GCCAACGAAA TCCAGGCGCA GCTCAAGAAA GTATCGGGCC TGGTGGACGT GGGTATCTTC
CGCGAGCTGG GCCAGCCGAC GCTGAACGTT TCGATCGACC GCCAGGCGGC TGCGCGCTTC
AACATCAACG TGAGCGACGT GCAGAACCTC GTGCAATACG CCATTGGCGG CGCCCCGGTC
ACGCAAATCC TGGAGGGCGA GAAATCGTTC GGCTTGGCGG TGCGCCTGAA TCAGCAGGCA
CGTGCGTCGT ACGACGCCAT CCGCGAGCTG CTGATCGATA CGCCTGACGG CCAGCACATT
CCGCTGTCGA TGATCGCCAA GGTGGAAATG ACCGATGGCC CGTTCTTCAT CTACCGCGAG
GAAGGCAAGC GCTACATTGC CATCAAGTTT GGCGTGCGCG GCCGTGACCT GGGCGGCGCC
GTGGACGAGG CCCAGCATGT GGTGGGCAGC AACGTAAAAC TGCCCGAAGG CTACACCGTC
AAGTGGGACG GCCAGTTCAA CGAGATGAAG GTCGCCCAGG GCAAGCTGAT GGTGATCGTG
CCGTTGACCA TCCTTGTGAT CTTCCTGCTG CTCTACAGCA CGTTCGGCAA TTTCAAGGAT
GCGCTGATGG TGGTGCTGAA TGTGCCGTTT GCCGCCATCG GCGGGCTGCT GGCGCTGCAC
ATTGCCAACG AGACGCTGTC GATTTCGGCG GGGATCGGCT TCCTGTCGTT GTTCGGCATC
GCCATCCAGG ACGGGGTGAT CCTGATTTCG TACGTCAATC GTCTGTCCCA ATCCGAAAAC
GTGCGTGAAG CGACCGTCGA TGGCGCCGCG CTGCGCCTGC GACCAGTGAT CATGACGGCC
ATGCTGGCAG GCCTGGGTCT GTTGCCGGCG GCGCTGTCGC ACAGCATCGG CTCGGAAGCG
CAGCGCCCGC TGGCGCTAGT GATCGTCGGG GGCATGGTCA CTACCACGAT TCTCACCCTG
CTGGTGTTGC CGGTGGTCTT CACGTGGGCG CATCGCCATC GTCGTCCGCC CCCGCGCGAT
TCGGACGTCA ATCCGACTGC TGCCATGCTG CCTTAA
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| Protein sequence | MGFNPIAGIL KRRLLIVFLA VALLVAGVLS FRELPLQAYP GVAPLSVQAI TQWPGRSTTE
VEQQITIPIE NALAGVPDVQ SFRSVSLFGL SVVTLKFKEG TDSFKARQNF SQYLASANLP
TGVQSSLSPD SDATGEIMRF RLEGDGVDLT TLKSYQDYDI SKGLKHVQGV ADVSSFGGKV
KEYHIVPSPA KLQSYGITLS QLITAIGNAN NNTGGNLLRD GEQQFVVRGV GLLQTVDDIR
NVVVNTNNGV PVRVRDIAEV EVGNVQRLGQ VQYNDQPDVV EGIVLLKRDA NATEVLAKVR
EKVAELNNGV LPKSIQVKPF YDRQVLLDIT MGTVEHTLVV GISLVLAVLF VFLGNFRAAA
VVAAVIPLAL CVSFISMEHF HVPANLISLG AIDFGVIVDA AVIVMENIMR HLEEGAEKLE
DAIIKATNEV QRAMIFSTGI IIVAYSPLFF IGGVEGIIFK PMAFTMGFAL MASIVLSLTF
VPATTSFVFG KTLHPHSPAF IAAILRWYKP LLRKLIARPM AVFATAITAL LLTLYSATFL
GTEFLPTLEE NNLWLRITLP NTVDLDYSAS VANDLRIYFT KQPEIKQVSV QIGRPDDGTD
STGVFNQEYG LYFAPPDQWE AGMTKGKLVE RLSKHLEKIP GIEYNFSQYI QDNVDEALSG
VKGENSVKLF GNDLNMLEAK ANEIQAQLKK VSGLVDVGIF RELGQPTLNV SIDRQAAARF
NINVSDVQNL VQYAIGGAPV TQILEGEKSF GLAVRLNQQA RASYDAIREL LIDTPDGQHI
PLSMIAKVEM TDGPFFIYRE EGKRYIAIKF GVRGRDLGGA VDEAQHVVGS NVKLPEGYTV
KWDGQFNEMK VAQGKLMVIV PLTILVIFLL LYSTFGNFKD ALMVVLNVPF AAIGGLLALH
IANETLSISA GIGFLSLFGI AIQDGVILIS YVNRLSQSEN VREATVDGAA LRLRPVIMTA
MLAGLGLLPA ALSHSIGSEA QRPLALVIVG GMVTTTILTL LVLPVVFTWA HRHRRPPPRD
SDVNPTAAML P
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