Gene Rpic12D_4365 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4365 
Symbol 
ID8022053 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp988333 
End bp989991 
Gene Length1659 bp 
Protein Length552 aa 
Translation table11 
GC content61% 
IMG OID644833140 
Producthypothetical protein 
Protein accessionYP_002984280 
Protein GI241665921 
COG category[S] Function unknown 
COG ID[COG4655] Predicted membrane protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.878571 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones24 
Fosmid unclonability p-value0.937445 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGGCCA CCTTTATCGC CACGGTTGGT CTGGCGGTGC TGGTGTCGAT CGACATCGGC 
AACCTGTTCT ATACGCAGCG CGCGTTGCAG CGTTCCGCCG ACCTCGCAGC CATGGCGGCC
GCACAGCGGC TGGATTTGCC TGCCGCCGCA CAGCAGGCGG TGATACAGAA CGGGCTGACG
GTGGATGGCA CCAACGTCAC GCTGGCCGTC GTGCCGGGCG TATGGGATGC CAGTGCGGGG
ACTGCTCCGA CGTACTTCAC CGCGCAAGCC GCAGTGGATG GAAATACGAA CGCCGCGCAG
GTGACGATCA CGCAGAACGT GCCGTATTTC TTCATGGTCG GTCAGCGGAG GTTGCAGGCG
ACTGCGATTG CGAAGAACAC GTCCATCGTG GCGTTCTCCC TGGGGTCCGG GTTGGCTTCT
GTCGATAACG GACTGCTGAA CCAGCTGCTC GGATATTTGC TTCACACGAA TCTGAATATC
GATGCTGTTT CCTATCAGGG GCTGGCCACA ACCAACATCC GGCTCGCCGA TCTTGCCGTG
GCGCTGGGGG CGGGGTCGAT GCAGCAATTG CTTTCGCTGT CACCCAGCCT CGGGAGCCTT
TTCAATGCCG TCATCTCAGT GGCATCGCAG TCAGGGCTGG CTGGGGTGTC GGTGGGTGGG
GCAGGCGCCA GCAATGCGTT GTCATTTGGC AGCGATCTGA ATGTGCCGAT CAATATTGGC
GATGGTGGAG CCTCTTCGCC GGGCTTGCTG CAGGTGCTGG CGCTGGCCGG TAATGAACAG
GCTGCGCTCA ATGCCACCGT CAACGTGCTC GATCTTCTGA CAACGGCTGC GCAGATTGCG
AATAGTCAGT CGGCTGTGAA TGTGGCGCCT GTGAAGCTAA ATCTGCTGGG TCTCGGCGCG
GTCACGTTGT CGTTGAAGAT CATTGAGCCA CCGGCGATTG CTGTTGGGCC GCCGGGGCAA
TTTTTGTCGG GTCCGAGCGC CGGGCAATGG AAGACCCAGG CGCGGACGGC TCAGGTGCGT
TTGGGCGTGG GGGTGCTGGT TGGCGCGCCG GGGGTCCTTG CTGTGAGTGT GCCTATTGGC
CTGCAAGTCG CGGCAGCGCA AGCCCATGCG AAGTCAAATA GCTGCACTGT TCCTCGTGCC
AGCTCATCAG CCACGATTTC CGCACAGCCC CAGCCCGTGT CGATATGTAT CGCGACCGAT
GCAGATAAGG CGGTCAATGG TTCAATGGAT TGCGCAAGCG CATCTCCCGC GGGTTTGGTT
GATTTGGGGC CCCTCGGGGC CGTGAGTATT AAAGCCAACG TGTCGCCAAT CGCAAACTCC
AATTGGGGCG ACGAAACCAT TGCCGCAACG CAGATCGGCC TGAATCCTCA AACGGATACC
AGCGGTAAGT CTCCGCCACG CGTTGCGACG CAGGCCGTCT TCAGTTCCAT CTTGAACAGC
AATCTGAATC AGCTCCAACT AACGGTGACT CTCCCGCTCG GAGGAACCGT TCAATTGGGT
TCTGATCTTG CACCCGTCAT AGCGCCGGTG TTGGCGTTGG TCGGGACGAC CCTGGATGCC
GTTCTCAGCC CACTGCTCGG GGTTCTCGGC ATCCAACTCG GCTACGCCGA CATCAAACTC
CTCTCGCTCG ACTGCGACGC CGTCGAGCTG GTTTACTGA
 
Protein sequence
MTATFIATVG LAVLVSIDIG NLFYTQRALQ RSADLAAMAA AQRLDLPAAA QQAVIQNGLT 
VDGTNVTLAV VPGVWDASAG TAPTYFTAQA AVDGNTNAAQ VTITQNVPYF FMVGQRRLQA
TAIAKNTSIV AFSLGSGLAS VDNGLLNQLL GYLLHTNLNI DAVSYQGLAT TNIRLADLAV
ALGAGSMQQL LSLSPSLGSL FNAVISVASQ SGLAGVSVGG AGASNALSFG SDLNVPINIG
DGGASSPGLL QVLALAGNEQ AALNATVNVL DLLTTAAQIA NSQSAVNVAP VKLNLLGLGA
VTLSLKIIEP PAIAVGPPGQ FLSGPSAGQW KTQARTAQVR LGVGVLVGAP GVLAVSVPIG
LQVAAAQAHA KSNSCTVPRA SSSATISAQP QPVSICIATD ADKAVNGSMD CASASPAGLV
DLGPLGAVSI KANVSPIANS NWGDETIAAT QIGLNPQTDT SGKSPPRVAT QAVFSSILNS
NLNQLQLTVT LPLGGTVQLG SDLAPVIAPV LALVGTTLDA VLSPLLGVLG IQLGYADIKL
LSLDCDAVEL VY