Gene Rpic12D_4360 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4360 
Symbol 
ID8022048 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp983717 
End bp985072 
Gene Length1356 bp 
Protein Length451 aa 
Translation table11 
GC content64% 
IMG OID644833135 
Producttype II secretion system protein E 
Protein accessionYP_002984275 
Protein GI241665916 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4962] Flp pilus assembly protein, ATPase CpaF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACACAGC CCATCGAGTT CTCCAACCAG GCGGACGCCG GCAACGGCGC GTTTGCCGTT 
TCGCAGGCTT TCCAGGACAT CAAGGAAGCC GCCCACGAAC ACCTGCTGAC ACGCATCGAA
GAACTTGGCG CCGAGTTCGG CCGCTGGTCG CGCACGGCCA TCCAGCGTTT TGTCGATCTG
GAAGTGGAAG GCTTTACGCG GATGCGCCGC ATTCCCGTCA ACGAGACGGA GATCCGGCAG
ATTGCCGAGG CGCTGACCAA GGAGTTGGCT GGCTTCGGGC CCATCGAAGA CCTGCTGGCC
GATCCGGCGG TGGAAGACAT TCTCGTCAAC GGCCACCTGG ACGTGTACGT GTCGCGCCAC
GGCATTCTGG AGCGCATTCC GGTGCGCTTT GCCGACAACA ACCACCTGCT GCGCATCGTG
CGCCGCATCC TTGCGCCCAT CGGCCGGCGG CTGGACGAAT CCAACCCGAT GGTCGATGCG
CGCTTGCCGG ACGGCGGCCG CATCAACGTG GTGATTCCGC CGCTGGCGCT GGAAGGGCCG
GTCGTGTCGA TCCGCAAGTT CCGGAAAGAT CCGCTCAAGC CTGAAGACCT GCTTGGCCTG
GGCACGATGA GCGAAGAGAT CGGGGCGCTG ATCGATTCTG CTGTGCGCGC GCGCTGCAAC
ATCCTGGTAA GCGGTGGCAC CAGCTCCGGC AAGACGTCGC TGCTCAACGC AATGGCGTAT
CACATTCCGA CGACCGAGCG CGTGATCACC ATTGAAGACA CGGCAGAGCT GTCGCTCAAT
CACCCGCACG TGGTGCGTCT GGAAAGCCGG CCGGGCGGCT TCGAGGGCAC GGGCGTCGTC
ACGATTCGGG AACTGCTGCG CAACAGCCTG CGCATGCGGC CCGACCGCAT CATCGTGGGC
GAAGTGCGCG GCGGTGAAGT CCTGGAAATG CTGCAAGCCA TGAGCACCGG CCACGATGGC
TCGATGGGCA CCATCCACGC CAGCAGCCCG CGCGAATGCC TCTACCGACT GGAAATGCTG
GCGGGCTTTG CCGGCTTCCA GGGCAGTGAG GTGAGCCTGC GCCGGCAGAT CACCAACGCC
ATTGATTTCA TCGTGCAGAT CGGCCGGCTA TCCAACGGCA AGCGTCGCAT CCTGTCGATT
ACGGAAGTCA CCGGGCTCGG GGACAACATC ATCTCGACGC AGGAGCTGTA CCGCTACGAG
CCCTATGTCG GCCCAGACGG CGAAGAGGTC GACCGCTGGA CGGCGCTTGG CCTGCAGCCG
CATTCGCCCA AGCTGGCCCG CATGCGCAAC AGCGAAGGCG GCGGGATGGA TGGCGGCATG
ACTGGATTTG GCGGCGGAGG CCGTTTCCAT GTCTAG
 
Protein sequence
MTQPIEFSNQ ADAGNGAFAV SQAFQDIKEA AHEHLLTRIE ELGAEFGRWS RTAIQRFVDL 
EVEGFTRMRR IPVNETEIRQ IAEALTKELA GFGPIEDLLA DPAVEDILVN GHLDVYVSRH
GILERIPVRF ADNNHLLRIV RRILAPIGRR LDESNPMVDA RLPDGGRINV VIPPLALEGP
VVSIRKFRKD PLKPEDLLGL GTMSEEIGAL IDSAVRARCN ILVSGGTSSG KTSLLNAMAY
HIPTTERVIT IEDTAELSLN HPHVVRLESR PGGFEGTGVV TIRELLRNSL RMRPDRIIVG
EVRGGEVLEM LQAMSTGHDG SMGTIHASSP RECLYRLEML AGFAGFQGSE VSLRRQITNA
IDFIVQIGRL SNGKRRILSI TEVTGLGDNI ISTQELYRYE PYVGPDGEEV DRWTALGLQP
HSPKLARMRN SEGGGMDGGM TGFGGGGRFH V