| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4342 |
|---|
| Symbol | |
|---|
| ID | 8022030 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 960687 |
|---|
| End bp | 962738 |
|---|
| Gene Length | 2052 bp |
|---|
| Protein Length | 683 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644833117 |
|---|
| Product | NADH:flavin oxidoreductase/NADH oxidase |
|---|
| Protein accession | YP_002984257 |
|---|
| Protein GI | 241665898 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1902] NADH:flavin oxidoreductases, Old Yellow Enzyme family |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.239319 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCCT CCACGCCCTC CTCGCCGTAC CCCCACCTAC TGAGCCCGCT CGACCTTGGC
TTCACCACGC TCAAGAACCG CGTGCTGATG GGGTCGATGC ATACCGGGCT GGAAGATGGC
AACCACTTCG ACCGGCTCGC CGCCTACTTT GCCGAGCGCG CACGCGGCGA TGTCGGGCTG
ATGGTCACGG GCGGATTCGC GCCCAATATT GCCGGTTGGA CCAAGCCCTT TGCCGGGCGC
CTGGCCACGC ATGGTGCGGC CCGCCGCCAC CGCGCGGTCA CCAACGCCGT GCATGAAGAA
GGCGGCAAGA TCGCCCTGCA GATCCTGCAC ACCGGCCGCT ATGGCTATCA CCCGTTTGCG
GTCGCGCCCA CGGCGCTGCG CTCACCCATC AGCCCGTTCA CGCCGCGCGA GTTGTCGGTG
CGCGGTATCG AGCGGCAGAT TCGCGCCTTC GTGCATTGCG CCCAGTTGGC CCGCGAAGCC
GGCTACGACG GCGTCGAGAT CATGGGTTCC GAGGGCTACT TCATCAACCA GTTCCTCGTC
ACCCACACCA ACAAGCGCAC GGACGACTGG GGCGGCAGCT ATGCCAACCG CATGCGCCTG
CCCGTGGAAA TCGTCCAGCG CACGCGCGAG GCGGTCGGCA AGGATTTCAT CATCATCTAT
CGCCTGTCGA TGATCGACCT GATTCCCGAC GGCAGCTCGT GGGAAGAAGT CGTGCAGCTT
GGCAAGGCCG TGGAGCGCGC GGGTGCCACC ATCATCAACA CGGGCATCGG CTGGCACGAG
GCGCGCATCC CGACCATTGC GACGAGCGTG CCGCGTGCGG CGTTTGCGTG GGTCACGAAG
AAGATGAAGG GCGAGGTCGG CATTCCGCTG GTGACGTCCA ACCGCATCAA CACGCCCGAG
GTGGCGGAGG CCGTGCTGGC CGACGGGTGC GCCGACATGG TTTCGATGGC CCGGCCGCTG
CTGGCCGATG CCGACTTCGT ACGCAAGGCC GCCACGAACC GCGCGCAGGA CATCAACACC
TGCATCGCCT GCAACCAGGC CTGCCTGGAC CACGCGTTCA AGGCCAAGAT TGCGAGCTGC
CTCGTCAACC CGCGCGCGTG CCATGAGACG GAACTCGTCA TTCGACCGAC GCCCGCCAAG
CGTCGCTTTG CAGTGGTGGG CGCCGGGCCT GCGGGGCTAT CCGCGGCGAT CACACTGGCC
GAGCGTGGGC ACGCCGTGGA CCTGTTCGAC GCGGCACCGG AACTCGGCGG CCAGTTGAAC
ATGGCCAAGA CGATCCCGGG TAAAGAAGAG TTTCATGAGA TGCTGCGTTA CTTCACCCGT
CGCGTCGCCA CGACGGGCGT GACGCTGCGC CTCGGTACAC GCGTGGATGC GCAGCAGCTT
CTTGCGGCCA AGTACGACGA GATCATCATC GCGACGGGCG TGTCGCCGCG CAATCCGAAG
ATCCCGGGGC AGGATCATCC GAGCGTGCTG TCGTACATCG ATGTGCTGCG CCATCGCAAA
CCGGTGGGCA AGCGCGTGGC GATTGTCGGA GCGGGTGGCA TCGGCTTTGA CGTGGCGGAA
TTCCTCGCGC TGGACGGCCA CTCGCCCACG CTCGATCTGC AAACGTGGCG CGCCGAATGG
GGCGTGGGAG ATCCGACCGA AGTGCGTGGC GGTGTGGATG GCATCCGCCC TGAACCCCAA
ACACCCGCGC GCGACATCGT CCTGCTGCAG CGGCGTGCCG GCAAACTCGG CGGCGGTCTC
GGCAAGACCA CGGGCTGGAT TCATCGGACC AGCCTGAAGA ACCTGGGCGT GCGCATGGTG
GGCGGCGTGA ACTACGAGCG CATCGGCGAC GAAGGCCTGC TCGTGAGCTA CGGCGAAAAA
CGCGAGGCCG CCGAATGGCT GCCGGTCGAT TCCGTCGTGC TGTGCGCCGG GCAAGAGCCA
TTGCGCGAAC TCGTTGCGCC GCTGCAGGCG GGCGGAGCAA AGGTGCACGT CATCGGTGGT
GCAGACGAGG CGCTCGAACT GGACGCCAAA CGCGCGATCG ACCAGGGAAC GCGTCTGGCT
GCATCGCTGT GA
|
|---|
| Protein sequence | MPASTPSSPY PHLLSPLDLG FTTLKNRVLM GSMHTGLEDG NHFDRLAAYF AERARGDVGL
MVTGGFAPNI AGWTKPFAGR LATHGAARRH RAVTNAVHEE GGKIALQILH TGRYGYHPFA
VAPTALRSPI SPFTPRELSV RGIERQIRAF VHCAQLAREA GYDGVEIMGS EGYFINQFLV
THTNKRTDDW GGSYANRMRL PVEIVQRTRE AVGKDFIIIY RLSMIDLIPD GSSWEEVVQL
GKAVERAGAT IINTGIGWHE ARIPTIATSV PRAAFAWVTK KMKGEVGIPL VTSNRINTPE
VAEAVLADGC ADMVSMARPL LADADFVRKA ATNRAQDINT CIACNQACLD HAFKAKIASC
LVNPRACHET ELVIRPTPAK RRFAVVGAGP AGLSAAITLA ERGHAVDLFD AAPELGGQLN
MAKTIPGKEE FHEMLRYFTR RVATTGVTLR LGTRVDAQQL LAAKYDEIII ATGVSPRNPK
IPGQDHPSVL SYIDVLRHRK PVGKRVAIVG AGGIGFDVAE FLALDGHSPT LDLQTWRAEW
GVGDPTEVRG GVDGIRPEPQ TPARDIVLLQ RRAGKLGGGL GKTTGWIHRT SLKNLGVRMV
GGVNYERIGD EGLLVSYGEK REAAEWLPVD SVVLCAGQEP LRELVAPLQA GGAKVHVIGG
ADEALELDAK RAIDQGTRLA ASL
|
|---|
| |