| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4327 |
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| Symbol | |
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| ID | 8022015 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 941946 |
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| End bp | 944696 |
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| Gene Length | 2751 bp |
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| Protein Length | 916 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644833102 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_002984242 |
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| Protein GI | 241665883 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.0127578 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCAGT TCCTTCCGGC TCAGGCCGGA GCCTCTCCTG CAGACGTTGC GCCCAGCCCC
GAGGCCGCCC AACGTCCGGT GGCGGTTACG GCCGGGGCGA TGGCCGAAGG GCGTAATACC
GATTTCGACG CGCTGTCGCG GCTGTCGTCC GACGCGGTAT TGCTGACCGT GGATGGGCGC
CTGGTGCAAG CCAACCCGGC CGCTGCCCGT CTGCTGGGCG CGCAGGATCC AGCGCAATTG
GCAGGCCTGC AACTCGCCGG CCTGATTCAT CCCGATGACG TTGCCCAGGT GGTGCCGCGC
CTGGCGGGCA TGGTGAGCAG CGGCGTGTCT GCCCAGCCCG TCGAGCACCG TCTCGTGCGT
GCCGACTACA CGCATGTTCT GGTTGCCAGC GAAGCCGCCG CGTGCGAGCA CGAAGGCCAG
CCCGCCGTCA TGCTCGTGCT GCGCGAAGCC GTGTCGCGCC ATGCGTTGGA GCGACACGCC
GTTCAGGCGC GCGCCGAGGC GCTGCATGCG CGCCGCCTGC TCGCTTCGGA GAATGCCGTG
CTTGCGCAAC TTGCCTCCAA CGCGACACTG TCGACCGTGC TGCGCCACCT GTGCCTGTAC
GTCGAGCAGG TCTACCCGAA TGCCATGTCG GCGCTGTTGT TGCTGGATGC AGGCTCGCAG
ACCCTGCGTG TGGCCGCTGC ACCCACGTTG CCTGCGGCCT ATGCCGCCAC GCTGGAAAAC
TCGCCTGTCG GTCCCGAGGC GGGCGCATGC GGTTGTGCCA TGTACCTGGG CGACACCGTG
TTCATCGACA GCATTGCGAC CGACCCGCGC TGGCAGCGGG AGCGCACGGC AGCACTGGCG
GCGGGTTTTG CTTCCGCCTG GGCGTTGCCG ATCCGTTCAT CGCGCGGGGA CAAGCTTGGT
GTGCTCGCGC TGTTCTATCG ACAGCCGTGC ATGCCCGTGG AAGAAGAACA GCATTTCCTT
GACGACGTCA CGCACCTGGC GGGCGTTGCC ATCCAGAAAG ACAACGTCGA ACGTGGTCTG
GCCGAAAGCG AAGAGCGCTA CCGGCTGGCG ATTTCGAACC TGCACGAAGG CGTCGTCATC
ATATCGCCGG ACGGTGTGGT GCAGGCCGCC AACGCCAGCG CCGAGCGAAT CTTGCGCGTC
CGCCCGGGGC AGCTTGTCGG GCGTAACCGG CTCGACCCGA TTCAACGCGT GGTGGACGAA
TACGGCAAGG AAATCGGTTC GACCATGATG CCGTCCGGGC AGGTGCTGCG CACTGGCGAG
CCCATCTTCG GCCGCGTCTA CGGGCTGTTG CTCAAGACGG GCGAACTGAT GTGGGTGCGG
CAGAACATCA TTCCGATCCG TCGTCACGCC GAGCCCACGC CTAGCAGCGT GATGCTGTCG
TTTGCCGATA TCACCGACAT CAAGCGCGCC GAGCAGCGCC TGCGCCATCT GGCCGCGCAC
GACGCGCTCA CGGGGCTGAC CAACCGCAGC TTCTTCATCG CGCACCTGGA AAGCGCCATT
GAGAGCGCGC GCGACGAGAG CCGCGAACTG GCGCTCTTCT TCCTCGACCT TGACCGCTTC
AAGAGCGTGA ACGACACCGC GGGCCATGCC TGCGGCGACA CGCTGCTGCA GAGCGCGGCC
GCACGCCTGA CCGACTGCAT CGGCCCCGGC GACGTGATCG CCCGTCTGGG CGGCGACGAG
TTCGTCATCC TCATCGACCA GCGTGTCGAG GGAAAGCGGA TTGCCTTGCT GGCTGAGCGC
TTGCTGCAGG CCATGCGCGA GCCGTTCGAT ACCGTCAACG GGCGGTATTA CCTGGGCGTG
TCGATTGGCG TGGCGCTGTA TCCGCACGAC GGCATTTCGG GTTCCGACCT GCTACGTTCG
GCTGACGCCG CCATGTACCG GGCCAAGCAG AACGGCCGTA ACCGTGCACA GTTCTACACG
GCTGAACTGA ACGCCCGCCT GCAACGTCGC TACATGCTGG AAAACGCGCT GCGTGACGCG
CGCGAGAACA ACGAGCTGCA GCTCGTCTAT CAACCCAAGT ACGACCTGGC CAGCCATCGC
ATCGTTGGCG CCGAGGCGCT GCTGCGCTGG AACAGCGCCA AGCTCGGAGC GATCTCGCCG
GTGGAGTTCA TTCCGGTGGC GGAAGAGACG GGGCTGATCG TGCCGATTGG CGCATGGGTC
CTGCGCCGTG CCTGCGAGCA GGCCGTGATC TGGTACGAAG CACTGGGCTA CGACTTCCGC
ATGGCGGTCA ACCTGTCGGC GCGCCAGTTC CAGGCCGGCG ATGTGGTGCC GATGATCGAG
CAGACGCTGG CCGACTCTGG CCTGCCGCCC ACCGCGCTCG AAGTCGAAAT TACCGAAAGC
CTGCTGATGG GTGGTGCGGA TGAAGTCCGC CCCATGTTCG ATGCGCTCAC CGCGCAGGGC
ATCCGGATCT CCATCGACGA TTTCGGTACC GGATATTCAT CGCTGTCGTA TCTGCAGCGC
TTCCCGATCA GCAACGTGAA GATCGACCGC TCGTTCATCA CCGGCATTCC GCACGACCCG
GATTCGGTGG CGCTGACCGA GGCCATCGTC GCCATGGCCC GCGCCCTGGG CATGACGGTC
ACAGCCGAGG GCGTGGAAGA CGCAGACCAG GTGGAGTTCC TCGCCAAGGC GGGCTGCCAG
GAAATCCAGG GTTACTACAT CGGTAAGCCG GTCACGGCCG AAGGTTTCGA CCGTTTGCTG
CGGGCGCACC TGTCGGTTGT GGATGCCGGC GTGCGCGCCG CGCTGGGCTG A
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| Protein sequence | MTQFLPAQAG ASPADVAPSP EAAQRPVAVT AGAMAEGRNT DFDALSRLSS DAVLLTVDGR
LVQANPAAAR LLGAQDPAQL AGLQLAGLIH PDDVAQVVPR LAGMVSSGVS AQPVEHRLVR
ADYTHVLVAS EAAACEHEGQ PAVMLVLREA VSRHALERHA VQARAEALHA RRLLASENAV
LAQLASNATL STVLRHLCLY VEQVYPNAMS ALLLLDAGSQ TLRVAAAPTL PAAYAATLEN
SPVGPEAGAC GCAMYLGDTV FIDSIATDPR WQRERTAALA AGFASAWALP IRSSRGDKLG
VLALFYRQPC MPVEEEQHFL DDVTHLAGVA IQKDNVERGL AESEERYRLA ISNLHEGVVI
ISPDGVVQAA NASAERILRV RPGQLVGRNR LDPIQRVVDE YGKEIGSTMM PSGQVLRTGE
PIFGRVYGLL LKTGELMWVR QNIIPIRRHA EPTPSSVMLS FADITDIKRA EQRLRHLAAH
DALTGLTNRS FFIAHLESAI ESARDESREL ALFFLDLDRF KSVNDTAGHA CGDTLLQSAA
ARLTDCIGPG DVIARLGGDE FVILIDQRVE GKRIALLAER LLQAMREPFD TVNGRYYLGV
SIGVALYPHD GISGSDLLRS ADAAMYRAKQ NGRNRAQFYT AELNARLQRR YMLENALRDA
RENNELQLVY QPKYDLASHR IVGAEALLRW NSAKLGAISP VEFIPVAEET GLIVPIGAWV
LRRACEQAVI WYEALGYDFR MAVNLSARQF QAGDVVPMIE QTLADSGLPP TALEVEITES
LLMGGADEVR PMFDALTAQG IRISIDDFGT GYSSLSYLQR FPISNVKIDR SFITGIPHDP
DSVALTEAIV AMARALGMTV TAEGVEDADQ VEFLAKAGCQ EIQGYYIGKP VTAEGFDRLL
RAHLSVVDAG VRAALG
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