| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4293 |
|---|
| Symbol | |
|---|
| ID | 8021981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 897947 |
|---|
| End bp | 899452 |
|---|
| Gene Length | 1506 bp |
|---|
| Protein Length | 501 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644833068 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT family |
|---|
| Protein accession | YP_002984208 |
|---|
| Protein GI | 241665849 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACAAGAG GCACTCAAGC CCTCCGTACC TCGTTGCTCG CGCTGGCCGC GTGCGCACTC
GTCTCCGCCT GCGCGGTCGG GCCCGATTAC AAGCGCCCCG ATGCCGAAGT GCCGCAGCAA
TACAAGGAAG CCGGCGACTG GAAAGTCGCC GATCCGAGCG ACGCCATTGC CCGCGGCAAG
TGGTGGGAGA TCTTCAACGA CCCGCAACTG AACGCGCTGG AAGAACAAGT GGCCGCCGCC
AATCAGAACA TCCTGGTGGC CGAGGCGCAG TACCGCCAGG CCCAGGCGCT GGTGCAATCG
GCACAGGCTT CGTTCTTCCC GACGCTGGGT GCCAATGCGT CAGCCACGCG CAGCCGTTCA
GTGCGCACGT CGGTCAACCC GGATGGCAGC CTGTCGACCG GCAACCCAAG CCTGCTCAAT
TCGCAGAGCC TGTCGCTCAA CGCCAGCTGG GAACTGGACC TGTGGGGCCG CATCCGCCGG
ACGGTTGAGT CGAACAAGGC GAGCGCGCAA GCCAGCGCAG GCGACTTATC GTCCGCTTTG
CTGTCGGCAC AGGCGACGCT TGCGCAGAAT TATTTTCAAT TGCGTGTCAC GGATACCCAG
AAAGCCGTCT TGCAACGCAC GGTGGCGAAC TACGAGCGCT TCCTGAAACT CACGCAAAAC
CAGTACGCCG TGGGCGTGGC GCAGCGTTCC GACGTGCTGA CCGCGCAGAC GCAACTCAAG
CAGTCGCAGG CGCTGCTGCT GGATACCGAA GTCACGCGGG CGCAGCTTGA GCACGCCATT
GCGGTGCTGA TCGGCAAACC GCCGGCGGAG TTCTCGCTGG CCCCAGCCAC TGCTGCGAGC
GCCGCCGACC TGCCGGCCCT GCCTGCCATT CCGCTGGAAG TGCCATCAGC AGTGCTGGAG
CGCCGTCCCG ACATCGCCGC CGCCGAGCGA CGCATGGCCG CTGTCAACGC GCAGATCGGC
GTGGCCAAGG CCGCGTACTT CCCGACGCTT ACGCTGGGTG CCTCGGCCGG CCTGGCGGCC
AACACGCTCA CGCGCCTGGC AACACTGCCC AGCCGCGTCT GGTCGATCGG CCCAACCCTG
GCAGCGACGC TGTTTGATGG CGGCGCGCGT GCAGCCGCCG TCGACAAGGC CGGCGCTGCC
TACGATGCGT CCGTCGCAAC GTACCGCCAG ACCGTGCTGG GGGCCTTCCA GGATGTCGAA
GACAACCTGG CCGCGCTGCG CTGGCAAACG CAGGAATTTG GCGTACAGGC CGATGCCGTC
AAGGCCGCGC AGGAAGCCGC GCAGCTCAAC CTGAACCGCT ATCGCGCGGG CACCGTGAGC
TTCCTGGAAG TCATCACAGC ACAGGCCACG GCCTACAGCG CCGAGCGCAC GCTGCTCACG
CTGCAGGGCA AGCAGTATTC GGCAGCGGTG CTGCTGGTGA AGGCGCTGGG CGGTGGCTGG
CACGGCGAAG TACCGGTGGT CGGCAAGGCA GCGCTGCAGC CGGCATCCAC GCCAGCCGCG
CAATAA
|
|---|
| Protein sequence | MTRGTQALRT SLLALAACAL VSACAVGPDY KRPDAEVPQQ YKEAGDWKVA DPSDAIARGK
WWEIFNDPQL NALEEQVAAA NQNILVAEAQ YRQAQALVQS AQASFFPTLG ANASATRSRS
VRTSVNPDGS LSTGNPSLLN SQSLSLNASW ELDLWGRIRR TVESNKASAQ ASAGDLSSAL
LSAQATLAQN YFQLRVTDTQ KAVLQRTVAN YERFLKLTQN QYAVGVAQRS DVLTAQTQLK
QSQALLLDTE VTRAQLEHAI AVLIGKPPAE FSLAPATAAS AADLPALPAI PLEVPSAVLE
RRPDIAAAER RMAAVNAQIG VAKAAYFPTL TLGASAGLAA NTLTRLATLP SRVWSIGPTL
AATLFDGGAR AAAVDKAGAA YDASVATYRQ TVLGAFQDVE DNLAALRWQT QEFGVQADAV
KAAQEAAQLN LNRYRAGTVS FLEVITAQAT AYSAERTLLT LQGKQYSAAV LLVKALGGGW
HGEVPVVGKA ALQPASTPAA Q
|
|---|
| |