| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4291 |
|---|
| Symbol | |
|---|
| ID | 8021979 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 895664 |
|---|
| End bp | 897004 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644833066 |
|---|
| Product | diguanylate cyclase with PAS/PAC sensor |
|---|
| Protein accession | YP_002984206 |
|---|
| Protein GI | 241665847 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGAGG ACGACCACTT GTACAAGGCT GCGATCGAAC ATTCGCCGAT AGGAATCGGC
CTGTGCGCGC CGGAGGGTCG CTTCCTCGAC GTGAACCGAG CGCTGTGCGC GCTGACCGGT
CACGAAGCAC AGGCGCTGCG CACGCGCGAT CTGTTCGACC TGTGCCACCC CGATCACACT
GAACGCACGC GACACGGCAT CGAGTCGCTG CTCACCGGCC AGCGCGATGC GCTGTCGATG
GAAACGCGCC TGGTCCGTCA AGACGGCACC ACCGTCTGGG TGCAGACCGA CGTGGCGGTG
GCGCACGATC ACGGCAACCA GCACCTCGTC GTGCAGATGC AGGATGTGAC CGCGCGGCGC
CTGGCGCTGG AATCGCTGCG CGCGTCGGAG CAACGGCTGG CCTATGTGCT GGACGGTGCC
GGGCTGGGTA CGTTCGACTG GTCCACGCGT GCGCGGCATG TGTCGTTCAA CCGCCGGACG
GCCGACATGC TCGGCTACGA GCCGACCGAT CTGTCCAACG ATCCGGATGC GTGGTTCGCC
ATGGTGCATC CGCAGGACGC CGCATTGAGC GCGCGGCGCA TCTATCGCCA TATGCGCGGT
GATGCCGACA GCTTTGAAAT CGAGCAGCGC ATGCGCGCGC GCCATGGCCA ATGGATCTGG
GTGGCTGCGC GCGGGCGCGT GACCGAGCGT GATGCCCGCG GCATGGCCAC GCGCGTGAGC
GGCACGCTGC TCGACGTGAC AAAGCGGCGC ACGGCGCTGG ACCAGGCGCA CCACCTTGCG
TTGCATGATC CGCTGACGGA CTTGCCCAAC GCACGTTTGC TTCGCGATCG CCTGTTCGTC
GCCATTCAAG CGGCGCGTCG CGCGCGCGGT CAGGTCGCCG TCGTGTTCAT TGATCTCGAT
CGCTTCAAGC CCGTCAACGA TGAGTACGGC CACGCGGTGG GTGATCTCGT CCTGAAGGCC
ACGGCGATGC GGTTGCGTAG CGGGCTGCGC GCCTCCGACA CGGTGGCGCG CCTGGGCGGC
GATGAATTTG TCGCCGTCCT CACGCATTGC GCCACGCGCG ACGATGTGAC GCAAACCGTG
GAGCGCCTGA TCGAGCAATT GCAGACGCCG TTCCGTGTGG AAGGCCATGT GCTGTCGATG
GGCGTGAGTG CCGGCGTGGC GCTGTATCCG ACCGACGGGC GTGATGCGCA GACGCTCATC
CGCAATGCCG ACGCTGCGAT GTATGAAGTC AAGCGTGCCG GTGGCAACGG CCTGGGTTTC
CATGCATCGC TCAACTACGA GCGGCTGATG GGCATGCGAT CGCGCGATCG TGATCTCGAC
GGCGAAGCCG ACGCCCGCTA G
|
|---|
| Protein sequence | MLEDDHLYKA AIEHSPIGIG LCAPEGRFLD VNRALCALTG HEAQALRTRD LFDLCHPDHT
ERTRHGIESL LTGQRDALSM ETRLVRQDGT TVWVQTDVAV AHDHGNQHLV VQMQDVTARR
LALESLRASE QRLAYVLDGA GLGTFDWSTR ARHVSFNRRT ADMLGYEPTD LSNDPDAWFA
MVHPQDAALS ARRIYRHMRG DADSFEIEQR MRARHGQWIW VAARGRVTER DARGMATRVS
GTLLDVTKRR TALDQAHHLA LHDPLTDLPN ARLLRDRLFV AIQAARRARG QVAVVFIDLD
RFKPVNDEYG HAVGDLVLKA TAMRLRSGLR ASDTVARLGG DEFVAVLTHC ATRDDVTQTV
ERLIEQLQTP FRVEGHVLSM GVSAGVALYP TDGRDAQTLI RNADAAMYEV KRAGGNGLGF
HASLNYERLM GMRSRDRDLD GEADAR
|
|---|
| |