| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4232 |
|---|
| Symbol | |
|---|
| ID | 8021920 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 833495 |
|---|
| End bp | 835072 |
|---|
| Gene Length | 1578 bp |
|---|
| Protein Length | 525 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644833010 |
|---|
| Product | spermidine synthase |
|---|
| Protein accession | YP_002984150 |
|---|
| Protein GI | 241665791 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4262] Predicted spermidine synthase with an N-terminal membrane domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.716937 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGACGC CGCAGCCTGA CGCCACATAC GAACCTACGC AGCCTTCGGG CCGCGGCAAT
GCCTTGCTGG TCCTCGCCGT CTTTGTGGTG GCCTCGTGCG GGCTCGCTTA CGAATTGATT
GCCGGGGCAT TGGCTTCGTA CCTGCTGGGC GATTCCATCC TGCAGTTCTC TTCCATCATC
GGCGCCTATC TGTTTGCGAT GGGCATCGGC TCGTGGCTCT CGCGCTACGT GGCCGATGAC
GCGCTGCTTG CCCGCTTTGT CGATCTGGAA TTGCTGGTCG GGCTGTTTGG CGGCGTGTCT
GCCGCGGCGC TGTTTGCGTT GTTTGCGCTG GAATCGGCGC CGTTCCGCCT GGTGCTGTAC
GCGCTGGTGA CGGTGATCGG CGTACTGGTC GGCATGGAGA TCCCGCTGGT GATGCGCATG
CTGCATCGGC GGCAGGCAAA GTTCTCCGAT CTCGTCAGCC GCGTGCTGAC GTTCGATTAC
CTTGGCGCGC TGGCGGTGTC GCTGCTGTTT CCGCTGGTGC TGGCGCCGCG CCTGGGGCTG
GTGCGCACCG GCTTCCTGTT CGGCCTGTTC AATACCGCGA TTGCGGTCTG GACGCTCTGG
CACTTCCGCG CCGAGCTGGC GCTTTCGGCC CGCATGCGTA CCGCGATGGC GTGGCGCGCC
GGCGCGGTAG CGGCAGCATT GCTCGCGGGC TTTGGCGCGT CAGACAAGCT CACGCACTGG
TCGGAGCGCG CGCTCTTTGG CGACGAGATC ATCCACGCGA TTTCCTCGCC GTATCAGCGG
CTGGTCGTCA CGCGCTGGAA AGACGACCTG CGCCTGTACA TCAACGGCAA CCTGCAGTTT
TCCTCGCGCG ACGAATACCG CTATCACGAG GCGCTGGTGC TGCCTGCGCT CGAAGCCGTG
CGCGGTGCGC GGCGCGTGCT GGTGCTGGGC GGCGGCGACG GACTCGCGCT GCGGCAGATC
CTGAAGTACC CGCAAATCGA GCACGTCACG CTGGTCGACC TGGACCCACG CATGACGAAC
CTGTTCTCGC ACGCCGAGGC ATTGGTTGCG CTCAATCAGC ATGCGTTCAG TGACCCGCGC
GTGACGGTGG TCAACGCCGA TGCTGCGCAA TGGATGCAGA CCGCCACCGA CATGTTCGAT
GTGGCCATCG TCGATTTTCC GGACCCGTCC AACTTCAGCA TCGGCAAGCT GTATTCGGTG
CCGTTCTATC GACTGCTGTC GCGCCATGTG GCGGATACGG GCCTGGTTGT CATTCAAGCC
ACGTCGCCCT ATTTCGCGCC GCGTTCGTAC TGGTGTGTGG ATGCGACGCT GAAGGAAGCC
GGTTACCGCA CGTGGCCGTA CCACGCGCTG GTGCCGTCCT TTGGTGAATG GGGCTTCATC
CTGGCCGCAC CGGGCCGCGC GGATTTCCAG CCACCCGCCT CGTACCGCGT GCCGACACGC
TTTCTGGATG CCGACACCAC GCATCAGATG TTCAGCTTCG CGCCCGACAT GCCGCGCCCG
AAAGTAGAGC CGAACCGGCT GAACAATCAA TCGCTGGTGC GGTATTTCGA AGAAGACTGG
CACGGCGTGC TGCGCTGA
|
|---|
| Protein sequence | MSTPQPDATY EPTQPSGRGN ALLVLAVFVV ASCGLAYELI AGALASYLLG DSILQFSSII
GAYLFAMGIG SWLSRYVADD ALLARFVDLE LLVGLFGGVS AAALFALFAL ESAPFRLVLY
ALVTVIGVLV GMEIPLVMRM LHRRQAKFSD LVSRVLTFDY LGALAVSLLF PLVLAPRLGL
VRTGFLFGLF NTAIAVWTLW HFRAELALSA RMRTAMAWRA GAVAAALLAG FGASDKLTHW
SERALFGDEI IHAISSPYQR LVVTRWKDDL RLYINGNLQF SSRDEYRYHE ALVLPALEAV
RGARRVLVLG GGDGLALRQI LKYPQIEHVT LVDLDPRMTN LFSHAEALVA LNQHAFSDPR
VTVVNADAAQ WMQTATDMFD VAIVDFPDPS NFSIGKLYSV PFYRLLSRHV ADTGLVVIQA
TSPYFAPRSY WCVDATLKEA GYRTWPYHAL VPSFGEWGFI LAAPGRADFQ PPASYRVPTR
FLDADTTHQM FSFAPDMPRP KVEPNRLNNQ SLVRYFEEDW HGVLR
|
|---|
| |