| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4098 |
|---|
| Symbol | |
|---|
| ID | 8021786 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 695130 |
|---|
| End bp | 696086 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644832879 |
|---|
| Product | SMP-30/Gluconolaconase/LRE domain protein |
|---|
| Protein accession | YP_002984019 |
|---|
| Protein GI | 241665660 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.52814 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.192978 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGT TCCTGCTCTC GCCACCGGCG ATGCGTGAAG CCGAAGTCTT CACGCGCATG
CCGGCCAAGT TTCGCAAGCC CGATGTCCAG ACGGAATGGG CACGCGCCAA TCGCGGCGGG
CAAGCCACCG ACTCGTTTCT CGAAGGACCG GTGTGGTGTC CGGATGGCCG CGGCTACGGC
CATCTGTACG TGACGGATAT CCCGCACGGC CGCGTCTTCC GCATCTCGCC GGCGGGCGAT
TGGGAACTGG TGACCGAATA CGACGGCGAG CCCAACGGCA TGAAGTTCGT CGACGATGCA
CACCTGCTCA TCACCGACTA CCGCAACGGG CTGATGCTGC TCGACATCAA GCGCGGCGAA
GTCACGCCGT ATCTTGAGCG CCGCAACTCT GAGCGCTTCA AGGGCGTGAA CGACCTGACG
TTCGATTCGC ACGGCAACCT GTACTTCACC GACCAGGGCC AGACCGGCCT GCAAGACCCG
ACGGGGCGCG TCTATCGCCT CTCGCCGGAA GGCAGGCTCG ACATGCTGCT CGGCAATTGC
CCCAGCCCCA ACGGGCTCGT GCTGTCGCCC GACGAGAAAG TGCTCTACGT CGCCATGACG
CGCGGCAACT GCGTGTGGCG TGTGCCGTTG CAGGCCGATG GCTCTGTCAG CAAGGTCGGA
CAGTTCTTCA CGTCGTACGG CCCGAGCGGC CCGGATGGTT TGACGATCGA CACCGCGGGG
CGGCTGTTCG TGGCCAACCC CGGACTCGGC CGCGCATGGG TGCTGAACCA CCGTGCGGAG
CCGGACATGA TCTTGACCAG CCCCGAAGGT GCATCGCTCA CGAACCTATG CTTCGGTGGC
CCCGAAATGA AGACGCTCTT CATGACCGAA TCGGTGTCCG GCACGGTGCT CAAGTCCGAG
ATGGACATCG CCGGCCCGCT GCCGCATCGA GCAAAGCAGA CAAAAGTCAC GCCCTAG
|
|---|
| Protein sequence | MSMFLLSPPA MREAEVFTRM PAKFRKPDVQ TEWARANRGG QATDSFLEGP VWCPDGRGYG
HLYVTDIPHG RVFRISPAGD WELVTEYDGE PNGMKFVDDA HLLITDYRNG LMLLDIKRGE
VTPYLERRNS ERFKGVNDLT FDSHGNLYFT DQGQTGLQDP TGRVYRLSPE GRLDMLLGNC
PSPNGLVLSP DEKVLYVAMT RGNCVWRVPL QADGSVSKVG QFFTSYGPSG PDGLTIDTAG
RLFVANPGLG RAWVLNHRAE PDMILTSPEG ASLTNLCFGG PEMKTLFMTE SVSGTVLKSE
MDIAGPLPHR AKQTKVTP
|
|---|
| |