| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_4093 |
|---|
| Symbol | |
|---|
| ID | 8021781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 689307 |
|---|
| End bp | 690800 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832874 |
|---|
| Product | long-chain-fatty-acid--CoA ligase |
|---|
| Protein accession | YP_002984014 |
|---|
| Protein GI | 241665655 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.0327517 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.151728 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCCC ACCTGATCTT CGACGATCGC CCGACCGATG CCGAAACGCT GCTCGCGCGC
GGTGCCGCCC TTGCCGGCGG TTTGCGCCGC ATGGGCGTGC AGGAGGGCGA CGTGATCGGC
GTGCTGCTGC GCAATGCACC TGCCTACATC GACGTGATGC ACGCCTGCCG CATCGCAGGG
TGCTACTTCT GCCCGATCAA CTGGCACTTC ACGCCGGCCG AGGTGGAGTT TCTGGTTCGC
GATTCCGGTG CCAAGGTATT GATCGGCCAT CGCGACCTCG TCGATGCGGC AGAACCGCTG
CTACCGGCCC ACGTGCAGCT GCTGCGCGTG GATGCAGAAG GCACCGACCG CGCCGACGGC
TATGCCAACT GGCTTGCGCT GCAGACGCCG TACGACGGGC CGATCGTTTC TCCGCGCGGG
CACATGGCCT ATACCTCGGG CACCACGGGG CGGCCCAAGG GCGTGGTACG CCAGGCCGTT
CCGCTCGATC AGCTCGAAGC GCATCTGCAG AAGGCACGCG CCGTGGTGGC TGCAACATTC
GGCATCGTGC CGGGCTGCCG TGCGCTGGTG CCTGCCCCGC TCTATCACAG CGCGCCGAGC
CTCTTTGCCC AGCAAGCCGC CCAGATGGCG GAGGTGCTGG TGGTGAACGC GCGCTTTGAT
GCCCTGCGCG TGCTGGAGCA GATCGAGCGC TACCGCATCG ACACGGTCTA CTTAGTGCCG
ATCATGTATG TACGCCTGCT CAAGCTGACC GACGAAGAAC GCAGCCGCTA CGACCTGTCT
TCGCTGCGCT TCGTGGCGTC CACGGGCGCA CCCTGCGCGC CGGAGATCAA GCGCCGCATG
ATCGACTGGC TCGGCCCAGT CATCTACGAA ACGTATGCAT CGAGCGAGAC CGGCATGATC
ACGGTGATGG ACCCGCGCGA CGCAGCCGCC CGCCCCGGCA GCGCCGGCCG CCCGGTGTGC
GACGCACGCG TGCGCATCCT GCGTGAAGAC GGCACGCCCT GCCCCACCGG AGAGATCGGC
CTGATCTACA GCCACCAACC CGCCTATCCC GATTTCACCT ACCGCGGCAA CGACGAAGCA
CGCAGCAAGA TCGAGCGCGA CGGCCTGGTC ACGCTCGGCG ACATGGGCTA CCTCGACGCG
GACGGCTACC TGTACGTGTG CGACCGCGCG TCGGACATGG TCATCTCGGG CGGCGTCAAC
ATCTACCCGG CCGAGATCGA ACATGCGCTG CTGCGCCACC CCGATGTGGT CGACTGCGCC
GTCTTCGGCG TGCCATGCGA TGAATACGGC GAACGCCTTG TCGCGGTGGT GCAGACCGAA
CGCCAAGACC TGCAGGCCGA GCCCTTGATC GAATGGCTGC GCGGTCAGAT TGCCGGCTTC
AAGATCCCGC GCCAGATCGA GTTCACCACA GCGCTGCCGC GCGACGACAA CGGCAAGATC
GCCAAGCGCC GGCTGCGCGA TGCATGGTGG AGCGACCGGC AGCGGCGCGT ATAA
|
|---|
| Protein sequence | MTAHLIFDDR PTDAETLLAR GAALAGGLRR MGVQEGDVIG VLLRNAPAYI DVMHACRIAG
CYFCPINWHF TPAEVEFLVR DSGAKVLIGH RDLVDAAEPL LPAHVQLLRV DAEGTDRADG
YANWLALQTP YDGPIVSPRG HMAYTSGTTG RPKGVVRQAV PLDQLEAHLQ KARAVVAATF
GIVPGCRALV PAPLYHSAPS LFAQQAAQMA EVLVVNARFD ALRVLEQIER YRIDTVYLVP
IMYVRLLKLT DEERSRYDLS SLRFVASTGA PCAPEIKRRM IDWLGPVIYE TYASSETGMI
TVMDPRDAAA RPGSAGRPVC DARVRILRED GTPCPTGEIG LIYSHQPAYP DFTYRGNDEA
RSKIERDGLV TLGDMGYLDA DGYLYVCDRA SDMVISGGVN IYPAEIEHAL LRHPDVVDCA
VFGVPCDEYG ERLVAVVQTE RQDLQAEPLI EWLRGQIAGF KIPRQIEFTT ALPRDDNGKI
AKRRLRDAWW SDRQRRV
|
|---|
| |