Gene Rpic12D_4051 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_4051 
Symbol 
ID8021739 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp633994 
End bp637488 
Gene Length3495 bp 
Protein Length1164 aa 
Translation table11 
GC content66% 
IMG OID644832832 
Producttrehalose synthase 
Protein accessionYP_002983972 
Protein GI241665613 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG3281] Uncharacterized protein, probably involved in trehalose biosynthesis 
TIGRFAM ID[TIGR02456] trehalose synthase
[TIGR02457] trehalose synthase-fused probable maltokinase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCGCA ATCCGACCGC GCTGCTGGTG GACGACGCGC TCTGGTACAA GGACGCCGTC 
ATCTATCAGC TGCATGTCAA ATCGTTCTGC GATTCCGACA ACGACGGCGT CGGGGACTTC
CCCGGGTTGA TCTCCAAGCT CGACTACATT GCCGAGCTGG GGGTGGACGT CATCTGGCTG
CTCCCGTTCT ATCCGTCACC GCGCCGCGAC GACGGCTACG ACATCGCTGA ATACCGCGGC
GTCCACCCCG ATTACGGCAA CATGGCCGAC GTGCGCCGCT TCATTGCCGA AGCGCATGCG
CGGGGCCTGC GCGTGATCAC GGAACTGGTC ATCAACCACA CGTCCGATCA GCACCCGTGG
TTCCAGCGTG CGCGGCGCGC CAAGCCGGGC TCTGCGCTGC GCGACTTCTA CGTGTGGTCC
GACAACGACA AGAGGTACGC CGGCACGCGC ATCATCTTCA TCGATACCGA GCCTTCAAAC
TGGACGTGGG ACCCGGTGGC CAACGCCTAT TACTGGCACC GCTTCTACTC GCACCAGCCC
GATCTCAACT TCGACAACCC GCGCGTGCTC AAGGCAGTGA TCGGCGTGAT GAAGTTCTGG
CTCAATCTGG GCGTGGATGG TCTGCGGCTC GATGCCGTGC CGTATCTCGT GGAACGCGAA
GGCACGTCGA ACGAGAACCT GCCCGAGACA CACGAAGTGC TGCGCAAGAT TCGCGCGGCC
ATGGATGGGG AATTCAAGAA CCGCCTGCTG CTGGCCGAGG CCAACCAGTG GCCGGAAGAC
ACGCAGGAAT ACTTCGGTGC CGGCGACGAA TGCCACATGG CGTTCCACTT TCCGCTGATG
CCGCGCATGT ACATGGCGAT CGCGCGTGAA GACCGTTTTC CGATCACCGA CATCATGCGC
CAGACGCCGG AGGTGCCCGC CGGCTGCCAA TGGGCCATCT TCCTGCGCAA TCACGACGAA
TTGACGCTCG AAATGGTGAC CGATGCCGAG CGCGACTACC TCTGGGAGGT CTACGCAAGC
GACCGCCGCG CGCGCCTGAA CCTGGGCATC CGCCGCCGGC TGGCACCGCT GCTGGAACGC
GACCGCCGCC GCGTCGAGCT GATGAACAGC CTGCTCTTCT CCATGCCCGG CACGCCCGTC
ATGTATTACG GCGACGAAAT CGGCATGGGC GACAACATCC ACCTCGGCGA CCGCGACGGC
GTGCGCACGC CAATGCAGTG GTCCCCCGAC CGCAACGGCG GCTTCTCGCG CGCCGACCCC
GAACAGCTCG TGCTGCCGGC CATCATGGGC TCGCTGTACG GCTATGAATC GGTGAACGTG
GAAGCGCAGA GCCGCGACGC GCATTCGCTG CTGAACTGGA CGCGCCGGCT GCTTGCCACG
CGCAAGCGGC ATCGCGTGTT CGGCCGGGGT TCCATCCAGT TTCTGCAGCC GTCCAACCGC
AAGGTGCTGG CGTATATCCG CGCGCTCGAA GGCGAAGCGC CGATCCTGTG CGTGGCGAAC
CTCTCCCGCG CCTCGCAGGC TGTGGAGCTG GATTTGTCCA CCTTTGCGCA GCGGGTGCCG
GTGGAGCTGA TTGGCGGGAC GGCGTTTCCG CCCATCGGCC AGTTGTCGTA TCTGCTCACG
CTGCCGCCCT ACGCCTTCTA TTGGCTGGAG CTGCGCGAGA ACGAGCCTGG CCCGACCTGG
TCGCAACCGG CTGCCGAGCA ATTGCCCGAG TTCACGACGC TGGTGCTGCG CGCAGGGCTG
GATGCCCTGG CCGATACGCG ACAGCGCGAG GCACACCGCC AGTTGATCGA ACGCGAAATC
CTGCCAACCT ATCTGCCCAA GCGCCGCTGG TTTGCCGCCA AGGACAGTGT GCTGCGTAGC
GCAAAGTTTG CCTGGGGCGC CCCCGTGCCG GTGGATGCCG CATCCACCAA CCGCCCGCTG
GCCGGGGCAA CGCGGCCCGA GGTGTTCCTC AACGAAGTGG CCGTCACGCT GGGCAGCCCC
GACGGCACCG AGCGCGTCGA GCGCTACCTG CTGCCGCTTT CCATCGCATG GGAATCGGCC
ACGCTGCCGG CTCTGCCCAT TCAGCTCGCC CTGGCGCGCG TGCGGCGCGG CCGCCATGTC
GGCTACCTGA CTGACGCCTT CACCACCGAG ACCTTCGCCC GGGCGCTGCT CACCAACCTC
GTGCGCGGCA CCACGCTGGA AGCCAATGAC GGCACCGTGC ATTTCGAGCC TGAACCGAAC
ATCGCAGAGC TGGCCGAACC TGCCGGGGCG CCTGAAGCCG GCAGCACACG GCCTGCGCCG
CTGCCGCTGG CACCCGACAC GCCCATCCAG TGGCTGGCGG CCGAGCAATC GAACAGCTCG
CTGGTGATTG GCGAGTCCGT TATCGTCAAG CTGATCCGCC GTATCGCAAC GGGCATCCAC
CCCGAGGTGG AGATGACGCG ACACCTCACG CGCGTGGGCT ACGCCAACAC GGCGGCACTC
ATCGGCGAAG TCTCTCACCA CGCTGCCGAC GGCGAACGCG CCACGCTGGC CGTCATGCAG
AGCTTCGTTC CCAACCAGGG CGATGCCTGG ACGTGGGCAC TGGACTACCT GCGACGCACC
ATCGACGAAC TGGCCGTGCA GATGGAAGGC GTGACCACGG GCGATGGTGA ATCGTCTCCG
GTGGCGGTCT CGGAAGCGCG CGTGGATACC GACGAGGCGT TGGCCGGCTA CGTCAACTTC
ATCGGCGTGA TCGGCACGCG GCTGGGCGAA TTGCATGCCG CGCTGGCGGC GCCCACCGAA
GACCCGAACT TCGGCGCGCG CATTGCAGAT GCCGACGATG CCACCTACTG GATCGCCCGC
GTGAGCGAGC AGCTGACCCG CGCGCATGAC AACCTGACGG CATGGCAACG GCAAAATCCC
GACAGCGCAC GGCAACCCGA CGTGCAATGG CTGCTGTCGC AACACCAGGC GCTGCTCGAC
GCCGCCCGCG CGCATGCCGA AAACGGCCTG GGCGCAACGC TCTCGCGCAT CCATGGCGAT
TTTCACCTCG GCCAGGTGCT GGTGGCGCAG GGCGATGCCT TCCTGATCGA CTTTGAAGGC
GAGCCCTCCC GCCCCGTGGA AGAACGCCGG CGCAAGACCA GCCCGCTGCG CGACGTGGCG
GGGCTGATGC GCTCGCTCGA CTACGTGGTG GGCGCCATGC GTCAGGGCCC CGATCATGTG
GCCGGGCCCG CGCAGGAGCG CCGCAACGTC CTGCTGGAGC GGTTCCGCGC TGCGTCCACC
GAACGCTTCC TGGAGGCGTA TGCCGCTGCC ATTCGCGGGC CCGATCTGAA CGCGCTGGAT
CAGCCCGTGG TCGACTTTCA CCTGCTCGAT CTTTTCCTGC TGGAAAAGGC CGCATACGAA
GTCAACTACG AAGCGTCCAA CCGCCCGACC TGGCTGCCGA TTCCGCTGGA AGGCTTCACA
CGCGTGGCAC GCCGCCTGCT GCATGCAGAG CCACCATCAC CCGCTGCAGA AGACCCGACG
GGAGGCCCAC CGTGA
 
Protein sequence
MTRNPTALLV DDALWYKDAV IYQLHVKSFC DSDNDGVGDF PGLISKLDYI AELGVDVIWL 
LPFYPSPRRD DGYDIAEYRG VHPDYGNMAD VRRFIAEAHA RGLRVITELV INHTSDQHPW
FQRARRAKPG SALRDFYVWS DNDKRYAGTR IIFIDTEPSN WTWDPVANAY YWHRFYSHQP
DLNFDNPRVL KAVIGVMKFW LNLGVDGLRL DAVPYLVERE GTSNENLPET HEVLRKIRAA
MDGEFKNRLL LAEANQWPED TQEYFGAGDE CHMAFHFPLM PRMYMAIARE DRFPITDIMR
QTPEVPAGCQ WAIFLRNHDE LTLEMVTDAE RDYLWEVYAS DRRARLNLGI RRRLAPLLER
DRRRVELMNS LLFSMPGTPV MYYGDEIGMG DNIHLGDRDG VRTPMQWSPD RNGGFSRADP
EQLVLPAIMG SLYGYESVNV EAQSRDAHSL LNWTRRLLAT RKRHRVFGRG SIQFLQPSNR
KVLAYIRALE GEAPILCVAN LSRASQAVEL DLSTFAQRVP VELIGGTAFP PIGQLSYLLT
LPPYAFYWLE LRENEPGPTW SQPAAEQLPE FTTLVLRAGL DALADTRQRE AHRQLIEREI
LPTYLPKRRW FAAKDSVLRS AKFAWGAPVP VDAASTNRPL AGATRPEVFL NEVAVTLGSP
DGTERVERYL LPLSIAWESA TLPALPIQLA LARVRRGRHV GYLTDAFTTE TFARALLTNL
VRGTTLEAND GTVHFEPEPN IAELAEPAGA PEAGSTRPAP LPLAPDTPIQ WLAAEQSNSS
LVIGESVIVK LIRRIATGIH PEVEMTRHLT RVGYANTAAL IGEVSHHAAD GERATLAVMQ
SFVPNQGDAW TWALDYLRRT IDELAVQMEG VTTGDGESSP VAVSEARVDT DEALAGYVNF
IGVIGTRLGE LHAALAAPTE DPNFGARIAD ADDATYWIAR VSEQLTRAHD NLTAWQRQNP
DSARQPDVQW LLSQHQALLD AARAHAENGL GATLSRIHGD FHLGQVLVAQ GDAFLIDFEG
EPSRPVEERR RKTSPLRDVA GLMRSLDYVV GAMRQGPDHV AGPAQERRNV LLERFRAAST
ERFLEAYAAA IRGPDLNALD QPVVDFHLLD LFLLEKAAYE VNYEASNRPT WLPIPLEGFT
RVARRLLHAE PPSPAAEDPT GGPP