Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_4048 |
Symbol | |
ID | 8021736 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 626961 |
End bp | 628802 |
Gene Length | 1842 bp |
Protein Length | 613 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644832829 |
Product | malto-oligosyltrehalose trehalohydrolase |
Protein accession | YP_002983969 |
Protein GI | 241665610 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGCAC CCGCCCCCCG GTTTGCGCAC GACATGCCGT TCGGCGCCAC CGTCCTGGCT GACGGCAACA CCCGCTTCCG GTTGTGGGCG CCCGACGCGA CCGCGGCCTG GATCGACATC GACGACACGC GCGGCAACGA GTCCATTCGT ATGGACGCCG AACCCGACGG TTGGTACGCA GCGGTGGCAC CCGTGGGCTC CGGCACGTGC TATCGGTACC GCCTCACCAA TCGAGACGGC GTGACGCTGT CAGTGCCCGA CCCCGCCGCA CGCGCACAGT GGCAGGACAT ACCTGGCCCA AGCCTTGTCG TTGATCCGCA GCGTTACCGC TGGCAGCACG CCGACTGGCA AGGGCGGCCC TGGCACGAGA CGGTGCTGTA CGAACTGCAC GTCGGCGCGC TGGGCGGTTT CAAGGGTGTG CGGGGGCGGC TGCCGGAACT GGCGCGGCTG GGCATCACGG CCATCGAGTT GATGCCGGTG GCGGAATTTC CGGGCGCGCG CAACTGGGGC TATGACGGCG TGCTGCCCTT TGCGCCCGAC GCCAGCTATG GCACGCCGGA CGACCTCAAG GCATTGATCG ACACCGCGCA CGGGCTCGGC ATGATGGTGT TTCTCGATGT GGTCTACAAC CACTTCGGGC CGGATGGAAA CTACCTGCAC CACTACGCGC GCAGCTTCTT CCGCGACGAT GTGCATACGC CCTGGGGCGC CGCCATCGAT TTCCGCAAGC CGCAGGTGCG CGAGTTCTTC ATCCAGAACG CGTTGATGTG GCTGATGGAA TATCGCTTTG ACGGCCTGCG GCTCGACGCC GTGCACGCCA TCACCGAGCG CGACTGGCTG GGCGAACTCG CCGCCCGCGT GCGACTGTCG GCCGAGCCTG GCCGGCATGT GCATCTGGTG CTGGAGAACG AGCACAACGC CGCATCGCTG CTGCGCGATG GCAACACCCA TGGCGACTTC GATGCGCAGT GGAACGACGA CGGCCACAAC GTGCTGCATG TGCTTCTCAC CGGCGAGCGC GAAGCCTATT ACGCAGCCTA TGCCGATGCG CCCGCGCAGC GCCTGGCGCG CGTGCTGCAA GACGGCTTCT GCTACCAGGG TGAGCCGTCA CCCATCCATG ACAACGCGCC GCGCGGTGAA CCAAGCGCGC ACTTGCCGCC CACCGCGTTC GTGCTTTTCC TGCAGAACCA CGACCAGATC GGCAATCGTG CCTTTGGCGA ACGGCTGACG CAGCTTGCCC ACCCCGATGC GCTGCACGCC GCGCAAGTGC TGTTGCTGCT GAGCCCGCAG ATTCCAATGC TGTTCATGGG TGAGGAATGG GGCAGCACCT GCCCGTTCCA ATACTTCACC AGCCATCACG GCATGCTGGC CGAAGCCGTG CGGGAGGGCC GCCGCAGGGA GTTTGCCAAG TTCGAGGCGT TTGCCGATCC GCACCAGCGC GAGCGCATTC CCGATCCCAA CGAAGAGCTG ACCTACCTCG CCTCCTGCCC CGGCGAGGCG AACCTGGCCG AACCCGCACA GCTCAACACA CTGAACCGCA TGCACCGCCT GCTGGCACTG CGTCACGCAG AGATCATCCC GCGCCTGCCC CATGCGCGCG CGCTCGATGC GGTGGCGCTG GGCCACGCCG GGGCCATTGC CCGCTGGCGC ATGGGCGATG GCAGCGTGCT CACGCTGATG CTCAATCTGG CCGATCAACC CGTGGCGGTG CCCACGGTGC TGGCGGGCAG CCCAGCCGAT CTGCTGCACG AATCGCGCGA GGGCGCCGCC GCCGCGCTCA TCACGCATCG CCTGCCGGAG CGCGCGTGCG TGGCATTGCT GCACACGCCA TCACCCGGCT GA
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Protein sequence | MTAPAPRFAH DMPFGATVLA DGNTRFRLWA PDATAAWIDI DDTRGNESIR MDAEPDGWYA AVAPVGSGTC YRYRLTNRDG VTLSVPDPAA RAQWQDIPGP SLVVDPQRYR WQHADWQGRP WHETVLYELH VGALGGFKGV RGRLPELARL GITAIELMPV AEFPGARNWG YDGVLPFAPD ASYGTPDDLK ALIDTAHGLG MMVFLDVVYN HFGPDGNYLH HYARSFFRDD VHTPWGAAID FRKPQVREFF IQNALMWLME YRFDGLRLDA VHAITERDWL GELAARVRLS AEPGRHVHLV LENEHNAASL LRDGNTHGDF DAQWNDDGHN VLHVLLTGER EAYYAAYADA PAQRLARVLQ DGFCYQGEPS PIHDNAPRGE PSAHLPPTAF VLFLQNHDQI GNRAFGERLT QLAHPDALHA AQVLLLLSPQ IPMLFMGEEW GSTCPFQYFT SHHGMLAEAV REGRRREFAK FEAFADPHQR ERIPDPNEEL TYLASCPGEA NLAEPAQLNT LNRMHRLLAL RHAEIIPRLP HARALDAVAL GHAGAIARWR MGDGSVLTLM LNLADQPVAV PTVLAGSPAD LLHESREGAA AALITHRLPE RACVALLHTP SPG
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