Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3992 |
Symbol | |
ID | 8021680 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 573702 |
End bp | 575873 |
Gene Length | 2172 bp |
Protein Length | 723 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644832778 |
Product | PTS system, lactose/cellobiose family IIC subunit |
Protein accession | YP_002983918 |
Protein GI | 241665559 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1455] Phosphotransferase system cellobiose-specific component IIC |
TIGRFAM ID | [TIGR00410] PTS system, lactose/cellobiose family IIC component |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.197427 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 29 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGACGC AGGCGCTATC GCCCTGGCTG AGGTTGTTGA GCGCCGCTGA GCGCTTCGAC CGCGGGCCGT ATTTCATTGC CATTCGGCGC GGGCTGGCGC TCTCGTTGCC GCTCATCATG GTGGGCGCGG TGGCGCTGCT GTTGCGCAAC CCGCCCACCG CCGGCATGCG CCACCTGCTG CTGGAGGCCT TTGGCACGCG GCTGGATGCC TTTTGCGACA GCGTGCTGGC CGGCACGATC GGCATCGGCT CGCTGGTCGC GCTGTTCGGG TTTGCCGATG TGTTGGCGCA GTTACACAAC CAGCGCGCCG GGCACCGCGT GGTCAACCCC ACCGTGGCGG CCGTGGTGGT GGTGTCGTGC TTCTTTACGC TCATCGCGCC GGCTGCGAAC GCATCGTTGA TGGCGTGGCT CTCGCTGGGG CAGGGGCTGT TTGGCGCGTT GGTGGTGGCG TCGCTGGGCG GCAGCCTGTT TCTCAAGCTG TGCAGCATCC GCCGTTTGCG CATTCCGTCC CACCATTTGA GCAACGATCT GCTGGTGGGC GATGTGCTGT CGGTTGTGCC GGCCGGCATG CTGACGATCC TGACGTTTGC CCTGCTCAAA GCCGGCATGG CGTGGGCGGG CTGGCTGCAC TTCATGGCGA TAGTCGACCC GCTGCTGGCG TGGCCGTATT CGGCAGTCTC CAATAGCCTG CTGTTTGGTT TGGGCTATGA GACGGCGGCG CAGGTGCTCT GGCTGTTCGG CATCCACGGG CCGAACGCGC TGTACACGGT GCACCAGCAC ATCCTGGAGC CCGCCGCGCA GGCCAATGCG GCGGCGGTTG CCAGTGGTGG CCAGCCGCCG TTCATCTTTA CCTATCACTT CTTCGCGGTG TTCGCGCGCA TGGGCGGCTC AGGCGGCACA CTCAGCCTGA TCTTGGCGCT GCTCATCTCC AGGCGCATGC AACGCGGCCG CAAGATGGCG CTGGTCGTCA TGCTGCCGGC ATTGTTCAAC GTGAACGAGC CCCTGCTCTT CGGGCTGCCG CTGGTGCTCA ACCCGGTCTA TGCGATTCCG TTCCTGCTCA CGCCGGTGGT GCAGATCCTG ATCGCCTATG CGGCCACCGT TGCCGACCTG ATGCCCAAGA CCAGCTACCC CGTGGCGTGG ACCACGCCGG CGCTGTTCAG CGGTTACGCG GCTACGGGCT CGGTGTGGGG GGCGGTGGTG CAGCTCATCG GCCTGGTGGT GGGGGCGGCG ATTTACCTGC CGTTTGTCCG CATGGCGGAT GTTCTGTCCG CACGGCGCAG TCAGGATGTG CTTGCGTCTT TGCTGCAGAT TGCGGAGTCG GCGGAGGTGA GCCTGAAGGG CCGGCGCTGT CTGGACCTGC CGGGCGACGA AGGCCGCATG GCGGTGGCGC TGGCCAGCGA CCTGGAAGAC GCCATCAAGA GAGAAGGGCA GATCTTTCTG GAGTTTCAGC CGCAGGTGGA TTGCTCAACC GGGCGCGTGT TCGGCGCCGA GGCGCTGCTG CGCTGGCAGC ATCCGGTGCT GGGGCGCGTG GCCTCGCCGA TCGTCGTGGC GCTGGCTGAT GACATTGGTC AGATCGATCA GTTGGGCCTG CGGATTCTGT CGCTCGCGTG TCAGCAGCGC GCGGCCTGGC GCGATGTCTT GCCGGACGAT TTCGTGGTCG CCGTGAATCT CTCACCTCGG CAGTTGCTGG ACTGCAGGCT GTACCGGAAC GTGCTCGACA TCCTGCATCG CGAAGGGTTG TCGCCCACGC AGCTCGAACT GGAGATCACT GAATCGACGA TGCTGCTGCC GGACATCACC GCCATCGGCA ACCTGAAGCA GCTGCGCGAG GCCGGCGTGA AAGTCGCGCT CGACGATTTC GGGATGGGCC ATACGTCGCT GCACTACCTG CGCGAGCTGC CGCTGGATAC CGTGAAGATC GACCGCTCGC TGGCAGATGT GAGCGCGGGC AGCGTCAACG AACACATTGT GCGCAGTATT GCCAGCCTGA GCCGCACGCT GAACCTGTCG ACGGTGGTGG AAGGCGTCGA GACGGAGCAG CAGCTTGAGC GCCTGTCGGC CTTGGGCTGT GAACGGTTTC AGGGGTATTT CTTCAGCCGC CCGCTGGCGC CGAGCGTGTG TCAGCAGTTT GTGCTGGATG CCAACCTGCG GCCGTTGGTG CACGCGCTTT GA
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Protein sequence | MTTQALSPWL RLLSAAERFD RGPYFIAIRR GLALSLPLIM VGAVALLLRN PPTAGMRHLL LEAFGTRLDA FCDSVLAGTI GIGSLVALFG FADVLAQLHN QRAGHRVVNP TVAAVVVVSC FFTLIAPAAN ASLMAWLSLG QGLFGALVVA SLGGSLFLKL CSIRRLRIPS HHLSNDLLVG DVLSVVPAGM LTILTFALLK AGMAWAGWLH FMAIVDPLLA WPYSAVSNSL LFGLGYETAA QVLWLFGIHG PNALYTVHQH ILEPAAQANA AAVASGGQPP FIFTYHFFAV FARMGGSGGT LSLILALLIS RRMQRGRKMA LVVMLPALFN VNEPLLFGLP LVLNPVYAIP FLLTPVVQIL IAYAATVADL MPKTSYPVAW TTPALFSGYA ATGSVWGAVV QLIGLVVGAA IYLPFVRMAD VLSARRSQDV LASLLQIAES AEVSLKGRRC LDLPGDEGRM AVALASDLED AIKREGQIFL EFQPQVDCST GRVFGAEALL RWQHPVLGRV ASPIVVALAD DIGQIDQLGL RILSLACQQR AAWRDVLPDD FVVAVNLSPR QLLDCRLYRN VLDILHREGL SPTQLELEIT ESTMLLPDIT AIGNLKQLRE AGVKVALDDF GMGHTSLHYL RELPLDTVKI DRSLADVSAG SVNEHIVRSI ASLSRTLNLS TVVEGVETEQ QLERLSALGC ERFQGYFFSR PLAPSVCQQF VLDANLRPLV HAL
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