| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3959 |
|---|
| Symbol | |
|---|
| ID | 8021647 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 537458 |
|---|
| End bp | 538678 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832747 |
|---|
| Product | major facilitator superfamily MFS_1 |
|---|
| Protein accession | YP_002983887 |
|---|
| Protein GI | 241665528 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.177015 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.0110236 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGGCCT CGCCTGCGTC CCCTACACCT TCCGCCACCA CTGCGCCCGC GGCCACCCAC
AGTGACACGC AAGGGCTCAT CCGCCTGCTG ACTGCCGGTG CGGGTATCAG TGTGGCGTGC
ATCTACCTGA ACCACCCGCT GCTCGGTCTG ATCAGCCGCG ACCTGAACAT CGCGCCAAAT
GCGTTGGGCG TGCTGCCTAC GCTCACGGCG GCAGGCTACG CCAGCGGCAT CTTCTTCTTC
GGGCCGTTGG GCGACCGCTA CGACCGCCGC CTCGTGATCC TGTGGAAGGC GGTCCTGCTG
ACGCTGGCGC TCATCGGCAG CTGCCTGGCA CCCAACCTGC CGCTGCTGGC GGCCGCGGGC
TTTGCGATCG GGCTGTCGGC CACCATCGCG CAGGACTTCG TACCCAGCGC CGCCGCCATC
AGCACGGACC ACAACCGCAA TCGCAACATC GGCACGGTAA TGACCGGTCT TTTGATCGGC
ATCGTCAGTT CACGCGTGTT CAGCGGCATC GTGGCAGACC ACTTCGGCTG GCGGGCGGCG
TTTGGCGTGT CGGCAGTGGC CATCGTCGGG CTGGCTATCG CCGTGCGGGC ATCCCATTTT
GGCGTGACAC CTGCCACGCG GCAGCCGTAC TTCACGTTGC TGCGCTCGCT GGGCACGCTG
TTCATGCAGC ATCCGCGCCT GCGTGCGTCG GCGCTGACAC AGGCGTTCAT CGGTATCGCG
TTCTCGGGAT TCTGGTCGAC GGTTGCGTTG CATCTGACGC GTTCCCTGGG GCTGTCGACG
GGGCAAGCCG GCCTGCTGGG GCTGGCCGGC GCCGCAGGGG CGCTTGGCGC GAGTATTGCG
GGCCGGCTGT CGGGTCGCGT GGCGCCGGGC CGCATCGCTG CCGGCGGCGC GCTGCTGATG
GCGGTCACGT TTGCCTCGAT GGCGATGTTC CCGCAGTCGC TCATCGCCAT CGTGATCGGC
ACCCTGGTGT TCGATGTGGG CGTGCAGGCG GCATTGGTTT CGCATCAGAC CATCATCTAC
GCGCTGGCCC CCGAAGCGCG CAGCCGCATC AATGCAGTGT TCATGACCGC ATTGTTCATC
GGCATGTCAG TAGGGGCTTA CGGTGCAAGC CTGGCGTGGA ATGCCGGACG CTGGTCGGGC
CTGATGACGT TCTGCGCGTC GGCGTCCCTG GTGGCACTGG GCTTGCGGGC ACTGTTCAAC
GCGCGGCTGG GCGCACACTG A
|
|---|
| Protein sequence | MSASPASPTP SATTAPAATH SDTQGLIRLL TAGAGISVAC IYLNHPLLGL ISRDLNIAPN
ALGVLPTLTA AGYASGIFFF GPLGDRYDRR LVILWKAVLL TLALIGSCLA PNLPLLAAAG
FAIGLSATIA QDFVPSAAAI STDHNRNRNI GTVMTGLLIG IVSSRVFSGI VADHFGWRAA
FGVSAVAIVG LAIAVRASHF GVTPATRQPY FTLLRSLGTL FMQHPRLRAS ALTQAFIGIA
FSGFWSTVAL HLTRSLGLST GQAGLLGLAG AAGALGASIA GRLSGRVAPG RIAAGGALLM
AVTFASMAMF PQSLIAIVIG TLVFDVGVQA ALVSHQTIIY ALAPEARSRI NAVFMTALFI
GMSVGAYGAS LAWNAGRWSG LMTFCASASL VALGLRALFN ARLGAH
|
|---|
| |