Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3958 |
Symbol | |
ID | 8021646 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 535970 |
End bp | 537274 |
Gene Length | 1305 bp |
Protein Length | 434 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644832746 |
Product | metabolite/H+ symporter, major facilitator superfamily (MFS) |
Protein accession | YP_002983886 |
Protein GI | 241665527 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.698828 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 0.0345957 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGATACCA CTGCCACCCC GCACGCAGTC GACCCGCACG ACACGCGCCG CCGCATCTTT GCCATCGTCG GCGCCTCGTC GGGCAACCTC GTCGAATGGT TCGACTTCTA CGTCTACGCG TTCTGCTCGC TGTACTTCGC GCCGGCCTTC TTCCCCAGCG GCGACAGGAC GACGCAGCTC CTGAACACGG CCGGCGTGTT CGCAGCGGGC TTCCTCATGC GGCCGATTGG CGGCTGGCTG TTTGGCCGCA TTGCGGACAA GCACGGCCGG CGCGCCGCGA TGATGATCTC GGTGCTGATG ATGTGCGGTG GCTCGCTCGT GATCGCCGTG GTGCCGACGT ATGCGCAGAT CGGCGCGCTC GCGCCGTTCA TCCTCCTGCT CGCACGCCTG TTCCAGGGCC TGTCGGTGGG CGGCGAGTAC GGCACCAGCG CGACCTACAT GAGCGAAGTC GCGCTCAAGG GCCGTCGCGG CTTCTTCGCA TCGTTCCAGT ATGTGACGCT GATCGGCGGT CAACTGTGCG CGCTGCTCGT GCTTGTCGTC CTGCAGCAGT TGCTCACCAC GGCCGAGCTG AAGGCCTGGG GCTGGCGCAT TCCGTTTGCA GTGGGCGCGC TGACGGCGCT GGTCTCGCTG TACCTGCGCA AGTCGCTGCA GGAAACGCAG ACCGTTGCGT CGCGCACCGC CAAGGGCGCC GGCACGATTC GCGGGGCCTG GCAGCACAAG GGCGCATTCC TCCGTGTGAT CGGATTTACC GCCGGCGGCT CGCTGATCTT CTACACGTTC ACCACGTACA TGCAGAAGTA CCTCGTCAAC ACGGCGGGCA TGAACACCAA GGTGGCTTCC AACGTGATGA CGGCGGCGCT GTTTGTTTAC ATGGTGCTGC AACCGGTGTT CGGGGCGCTG TCTGACCGCA TTGGCCGGCG CACCTCGATG CTGTTCTTTG GCGTGTTGTC GGTGCTCGGC ACAGTCCCGC TGATGCATGC GCTGGCCACG GTGTCGAGCC CCTATGCGGC CTTCGGCCTG ATCACGGTGG CGCTGGCCAT CGTGAGCTTC TACACGTCGA TCAGCGGCCT GATCAAGGCC GAGATGTTCC CGCCGGAAGT GCGCGCGATG GGCGTCGGCC TGTCGTATGC GATTGCCAAC GCGGTGTTCG GCGGTTCAGC CGAATACGTG GCGCTCTGGT TCAAGAAGGC CGGTACCGAG CCGACGTTCT ACTGGTACGT GACTGCGCTG TGCGCGTTGT CGCTGGTGGT GACGTACTTC ATGCCGGATC CGAGCAAGGA AGGGTATCTG CGCAACGAGC CGTAA
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Protein sequence | MDTTATPHAV DPHDTRRRIF AIVGASSGNL VEWFDFYVYA FCSLYFAPAF FPSGDRTTQL LNTAGVFAAG FLMRPIGGWL FGRIADKHGR RAAMMISVLM MCGGSLVIAV VPTYAQIGAL APFILLLARL FQGLSVGGEY GTSATYMSEV ALKGRRGFFA SFQYVTLIGG QLCALLVLVV LQQLLTTAEL KAWGWRIPFA VGALTALVSL YLRKSLQETQ TVASRTAKGA GTIRGAWQHK GAFLRVIGFT AGGSLIFYTF TTYMQKYLVN TAGMNTKVAS NVMTAALFVY MVLQPVFGAL SDRIGRRTSM LFFGVLSVLG TVPLMHALAT VSSPYAAFGL ITVALAIVSF YTSISGLIKA EMFPPEVRAM GVGLSYAIAN AVFGGSAEYV ALWFKKAGTE PTFYWYVTAL CALSLVVTYF MPDPSKEGYL RNEP
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