Gene Rpic12D_3958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3958 
Symbol 
ID8021646 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp535970 
End bp537274 
Gene Length1305 bp 
Protein Length434 aa 
Translation table11 
GC content65% 
IMG OID644832746 
Productmetabolite/H+ symporter, major facilitator superfamily (MFS) 
Protein accessionYP_002983886 
Protein GI241665527 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00883] metabolite-proton symporter 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.698828 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value0.0345957 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATACCA CTGCCACCCC GCACGCAGTC GACCCGCACG ACACGCGCCG CCGCATCTTT 
GCCATCGTCG GCGCCTCGTC GGGCAACCTC GTCGAATGGT TCGACTTCTA CGTCTACGCG
TTCTGCTCGC TGTACTTCGC GCCGGCCTTC TTCCCCAGCG GCGACAGGAC GACGCAGCTC
CTGAACACGG CCGGCGTGTT CGCAGCGGGC TTCCTCATGC GGCCGATTGG CGGCTGGCTG
TTTGGCCGCA TTGCGGACAA GCACGGCCGG CGCGCCGCGA TGATGATCTC GGTGCTGATG
ATGTGCGGTG GCTCGCTCGT GATCGCCGTG GTGCCGACGT ATGCGCAGAT CGGCGCGCTC
GCGCCGTTCA TCCTCCTGCT CGCACGCCTG TTCCAGGGCC TGTCGGTGGG CGGCGAGTAC
GGCACCAGCG CGACCTACAT GAGCGAAGTC GCGCTCAAGG GCCGTCGCGG CTTCTTCGCA
TCGTTCCAGT ATGTGACGCT GATCGGCGGT CAACTGTGCG CGCTGCTCGT GCTTGTCGTC
CTGCAGCAGT TGCTCACCAC GGCCGAGCTG AAGGCCTGGG GCTGGCGCAT TCCGTTTGCA
GTGGGCGCGC TGACGGCGCT GGTCTCGCTG TACCTGCGCA AGTCGCTGCA GGAAACGCAG
ACCGTTGCGT CGCGCACCGC CAAGGGCGCC GGCACGATTC GCGGGGCCTG GCAGCACAAG
GGCGCATTCC TCCGTGTGAT CGGATTTACC GCCGGCGGCT CGCTGATCTT CTACACGTTC
ACCACGTACA TGCAGAAGTA CCTCGTCAAC ACGGCGGGCA TGAACACCAA GGTGGCTTCC
AACGTGATGA CGGCGGCGCT GTTTGTTTAC ATGGTGCTGC AACCGGTGTT CGGGGCGCTG
TCTGACCGCA TTGGCCGGCG CACCTCGATG CTGTTCTTTG GCGTGTTGTC GGTGCTCGGC
ACAGTCCCGC TGATGCATGC GCTGGCCACG GTGTCGAGCC CCTATGCGGC CTTCGGCCTG
ATCACGGTGG CGCTGGCCAT CGTGAGCTTC TACACGTCGA TCAGCGGCCT GATCAAGGCC
GAGATGTTCC CGCCGGAAGT GCGCGCGATG GGCGTCGGCC TGTCGTATGC GATTGCCAAC
GCGGTGTTCG GCGGTTCAGC CGAATACGTG GCGCTCTGGT TCAAGAAGGC CGGTACCGAG
CCGACGTTCT ACTGGTACGT GACTGCGCTG TGCGCGTTGT CGCTGGTGGT GACGTACTTC
ATGCCGGATC CGAGCAAGGA AGGGTATCTG CGCAACGAGC CGTAA
 
Protein sequence
MDTTATPHAV DPHDTRRRIF AIVGASSGNL VEWFDFYVYA FCSLYFAPAF FPSGDRTTQL 
LNTAGVFAAG FLMRPIGGWL FGRIADKHGR RAAMMISVLM MCGGSLVIAV VPTYAQIGAL
APFILLLARL FQGLSVGGEY GTSATYMSEV ALKGRRGFFA SFQYVTLIGG QLCALLVLVV
LQQLLTTAEL KAWGWRIPFA VGALTALVSL YLRKSLQETQ TVASRTAKGA GTIRGAWQHK
GAFLRVIGFT AGGSLIFYTF TTYMQKYLVN TAGMNTKVAS NVMTAALFVY MVLQPVFGAL
SDRIGRRTSM LFFGVLSVLG TVPLMHALAT VSSPYAAFGL ITVALAIVSF YTSISGLIKA
EMFPPEVRAM GVGLSYAIAN AVFGGSAEYV ALWFKKAGTE PTFYWYVTAL CALSLVVTYF
MPDPSKEGYL RNEP