| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3955 |
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| Symbol | |
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| ID | 8021643 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 533190 |
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| End bp | 534011 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644832744 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002983884 |
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| Protein GI | 241665525 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.312722 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 0.123612 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCTGG ATAAGAAGGT TGCCGTGGTG ACAGGGGCGG CTGGCGGTTT GGGGAAAGCC
ATCGCATTGG CCTACGCCGA TGCGGGTGCC AAGCTCGTCG TTTGCGACAT CAACACGACT
GCGCTGGAAG TGACCCGTGC CGAGATCGAA TCCCGCAACG CTGAATGCCT GGCCTTGCAT
TGTGATGTGG GATCGAGCAG TGCCGTTGCA AACCTGTTTG AACAAGTCGA TGCGCACTTC
GGAACAGTGC ACGTCCTCGT CAACAATGCG GCCGTGATTC CATCCCAGCC GGTTGACGAG
CAGCGCCGCC TGCAGCATTA CGCCTACCTC ACAACGCCGC AACCGCGCCA CACGCTGGGC
TTTACCAGCA GCATGACCGA CGATGATTGG CATCGCTTCT GGGATGTGAA CGTACATGGC
GTTTTCTACT GCACGCGTGA GGCGCTCAAG CGGATGGAGC CGCAGGGCGA CGGCAAGGTC
ATCAATATCG CGTCGATTGC GGGGCTGGCG GCGCTGAGCG CGCACAGCCC GCACTATTCA
GCGACCAAGG GCGCCGTCGT GGCGTTCACG CGCTCGGTGG CAGCCGAGGT GGCTGGCGCC
AATATCTTCG TCAACGCCAT CGCCCCGGGT GGTGTGCATA CCGACCATTT CGAAGCCTTG
CTTCAGGGTA TCGGCGAAGA GAAGCGCAAC CAGCTCTTTC AACTCGTCCC GCTGGGCCGC
CTGGGCACGC CCGAGGAATA CGCCTCGCTT GCCGTCTATC TGGCTGCGGA CGGGCATTAC
ATCGCGGGTC AGATCATCAG CCCGAATGGC GGGATGTTCT AG
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| Protein sequence | MKLDKKVAVV TGAAGGLGKA IALAYADAGA KLVVCDINTT ALEVTRAEIE SRNAECLALH
CDVGSSSAVA NLFEQVDAHF GTVHVLVNNA AVIPSQPVDE QRRLQHYAYL TTPQPRHTLG
FTSSMTDDDW HRFWDVNVHG VFYCTREALK RMEPQGDGKV INIASIAGLA ALSAHSPHYS
ATKGAVVAFT RSVAAEVAGA NIFVNAIAPG GVHTDHFEAL LQGIGEEKRN QLFQLVPLGR
LGTPEEYASL AVYLAADGHY IAGQIISPNG GMF
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