Gene Rpic12D_3915 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3915 
Symbol 
ID8021602 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp491147 
End bp493375 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content64% 
IMG OID644832703 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_002983844 
Protein GI241665485 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG4774] Outer membrane receptor for monomeric catechols 
TIGRFAM ID[TIGR01783] TonB-dependent siderophore receptor 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAACCGCC GCACGCCCGT CGCCAGCGCA CTGCTGGCCC TGTTCGCCAC GCCCCCTGTC 
GCGCTCGCCC AACAAGCACC TTCGAGCCCG ATCGCTGCCA CCACCACGTT GCCAGAAGCC
GTCGTTCGGG CGACTGCCCC GCGCGACGAC TACAACGCCG CCAAAAGCTC CATCTCGAAG
CTGCCCGAGA ACCTGCGCGA TGTGCCGCAA TCGGTGACGG TCGTGCCCAA GGCGCTGACC
GACGCGCAAG GCGGCAGCTC GCTGGCCGAT GCGCTGCGCA ACGTGCCGGG CATCACCATC
GGTGCGGCCG AAGGCGGGCA GATCGGCAAC AACATCAACC TGAACGGTTT CTCAGCGCGT
ACCGACATCT ACCTCGACGG CTTCCGTGAT CGCGGTCAGT ACTACCGCGA CCTGTTCGCC
CTCGATTCGG TGGAAGTGCT GATGGGCCCC TCGTCGATGC TGTTTGGCCG CGGTTCAACG
GGCGGCGTTA TCAACCAGGT GACGAAGAAG CCGAAGCTGA AGGCGGCGAC GGAGATCACC
GGTTCGGTCA CGACCAACGG CCTCGTGCGC GCCACCGCCG ACGTCAACAC GCCGACGTCC
GATACCTCCG CCTTCCGCAT CGCCGCGATG GCGCAGAACG GCAAGACGAG CACGCGCGAC
GAGATGACCG CGCAGGATTT CGGCATCGCG CCGTCGTGGC GTTTCGGCAT CGGCACGCCA
ACCGAGGTGA CGCTGTCCGC GTTGCTGCAG CACAACCGCG ACATGCCCGA CTACGGCGTG
CCGAACCTCA ACGGCCACCC GGTCAACGTC AGCCCCAAGA CGTATTACGG CTACACCGAT
GACCGCACCA CGCAGGACGT GGCGTCGTTC TCGGCCAATA TCGATCACAA GTTCTCGCCC
AACCTGCGGC TGCGCAATCA GACGCAGTTC AATTACGTAC AGACCGATGC GCGCGAGACG
GCGCCCAACG CGGTGGGTAC GGTCAATTCG TCAGGCGTGT TCACGGCATT GACCAACAGC
AATCTGCCGC TCTCGGCGCT GTCGGTGCGT CTGCAAAGCC ATGACCGCCG CATCCGTGAC
TATTCGCTGT TCAACCAGAC CGAGCTGACA GCCAAGTTCG ATACGGGTTC GGTCAAGCAC
ACGCTGCTGG TCGGCACCGA GTTCGGCCAC GACGGTTACG ACAACCAAAA CTATTACCGC
AACGGCTCGT GCAACGGCAC GCCGCTGGCG CAGTCGAGCA TGACAAGCGG CTTCGTCTCG
TGCGAGCCAC TGGTCAGCCC GAGCTACACC ACGTCGCCGG CCAGCACGCC GTCGAGCCTG
GGTAACCTGC AGGGCGGCTC GGCCAACACG GTGGCTGCGT ACTTCAACGA TTCGATCGAA
TTCACCAAGC AATGGAAGGC GGTGGCCGGC CTGCGCTACG ACCGCTATGT GGCGAGCATT
TCGAACTCGC TGAATTCAGC GAACACGCCG GCGTCGGCCA AGATCACCGC GCTGCCGTAT
GCGCAGCAGA GCGTGAACTT TGTCAGCACG CGCCTGGGCG GCATCTGGCA GCCGACGGAC
TGGCAGTCGT ACTACGTGTC GTACGGCACG TCGTTCAACC CGTCATTGGA ACAACTCGTG
GGCACCACGG GCCAGCAGGG GTTGGACCCG GAGAAGAACA AGTCGTATGA AGCCGGTGGC
AAGTGGGATC TGCTCAACGG CGATCTGTCG GTCAGCTCGG CGCTGTTCCA GATCACCAAG
GACAACGCCC GCACACAGAT CGACAGCACG ACGTACACGT CGGCCGGCAA GATCCGCGTG
CGCGGTGCGC GCCTGGGTGC CACGGGCCAT GTCACCGACA AGCTGCAGAT CTTCGCGGGC
TATACGTACC TGGATGCGCA GATCGTCAAT GGCATCGCCG CGGGCACGCA GGGCATGACG
CCGGCCAACA CGCCCAAGCA TTCGGCCACA GTGTGGACGA GCTACGCCTT TGTGCCGAAC
TGGGAAGTGG GTGCGGGCGC GTTCTACATG TCCCAGCGGT ATGCCAACAA CACCAACACC
GTGCAGACGG GCGGCTTCGT GCGTTGGGAC GCGATGCTGG CCTACCATCA GCCGAAATAC
GACGTGCGGC TGAACCTGTT CAACGTGTTC AACAAGACGT ATTACGATGC GCTGATTCCT
TCCGATGGCG GTCGCGCCGT GCCGGGCACC GGCCGTGCGG CGATGCTCTC GGTGGTGTAT
CGGATGTAA
 
Protein sequence
MNRRTPVASA LLALFATPPV ALAQQAPSSP IAATTTLPEA VVRATAPRDD YNAAKSSISK 
LPENLRDVPQ SVTVVPKALT DAQGGSSLAD ALRNVPGITI GAAEGGQIGN NINLNGFSAR
TDIYLDGFRD RGQYYRDLFA LDSVEVLMGP SSMLFGRGST GGVINQVTKK PKLKAATEIT
GSVTTNGLVR ATADVNTPTS DTSAFRIAAM AQNGKTSTRD EMTAQDFGIA PSWRFGIGTP
TEVTLSALLQ HNRDMPDYGV PNLNGHPVNV SPKTYYGYTD DRTTQDVASF SANIDHKFSP
NLRLRNQTQF NYVQTDARET APNAVGTVNS SGVFTALTNS NLPLSALSVR LQSHDRRIRD
YSLFNQTELT AKFDTGSVKH TLLVGTEFGH DGYDNQNYYR NGSCNGTPLA QSSMTSGFVS
CEPLVSPSYT TSPASTPSSL GNLQGGSANT VAAYFNDSIE FTKQWKAVAG LRYDRYVASI
SNSLNSANTP ASAKITALPY AQQSVNFVST RLGGIWQPTD WQSYYVSYGT SFNPSLEQLV
GTTGQQGLDP EKNKSYEAGG KWDLLNGDLS VSSALFQITK DNARTQIDST TYTSAGKIRV
RGARLGATGH VTDKLQIFAG YTYLDAQIVN GIAAGTQGMT PANTPKHSAT VWTSYAFVPN
WEVGAGAFYM SQRYANNTNT VQTGGFVRWD AMLAYHQPKY DVRLNLFNVF NKTYYDALIP
SDGGRAVPGT GRAAMLSVVY RM