Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3915 |
Symbol | |
ID | 8021602 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 491147 |
End bp | 493375 |
Gene Length | 2229 bp |
Protein Length | 742 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644832703 |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_002983844 |
Protein GI | 241665485 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAACCGCC GCACGCCCGT CGCCAGCGCA CTGCTGGCCC TGTTCGCCAC GCCCCCTGTC GCGCTCGCCC AACAAGCACC TTCGAGCCCG ATCGCTGCCA CCACCACGTT GCCAGAAGCC GTCGTTCGGG CGACTGCCCC GCGCGACGAC TACAACGCCG CCAAAAGCTC CATCTCGAAG CTGCCCGAGA ACCTGCGCGA TGTGCCGCAA TCGGTGACGG TCGTGCCCAA GGCGCTGACC GACGCGCAAG GCGGCAGCTC GCTGGCCGAT GCGCTGCGCA ACGTGCCGGG CATCACCATC GGTGCGGCCG AAGGCGGGCA GATCGGCAAC AACATCAACC TGAACGGTTT CTCAGCGCGT ACCGACATCT ACCTCGACGG CTTCCGTGAT CGCGGTCAGT ACTACCGCGA CCTGTTCGCC CTCGATTCGG TGGAAGTGCT GATGGGCCCC TCGTCGATGC TGTTTGGCCG CGGTTCAACG GGCGGCGTTA TCAACCAGGT GACGAAGAAG CCGAAGCTGA AGGCGGCGAC GGAGATCACC GGTTCGGTCA CGACCAACGG CCTCGTGCGC GCCACCGCCG ACGTCAACAC GCCGACGTCC GATACCTCCG CCTTCCGCAT CGCCGCGATG GCGCAGAACG GCAAGACGAG CACGCGCGAC GAGATGACCG CGCAGGATTT CGGCATCGCG CCGTCGTGGC GTTTCGGCAT CGGCACGCCA ACCGAGGTGA CGCTGTCCGC GTTGCTGCAG CACAACCGCG ACATGCCCGA CTACGGCGTG CCGAACCTCA ACGGCCACCC GGTCAACGTC AGCCCCAAGA CGTATTACGG CTACACCGAT GACCGCACCA CGCAGGACGT GGCGTCGTTC TCGGCCAATA TCGATCACAA GTTCTCGCCC AACCTGCGGC TGCGCAATCA GACGCAGTTC AATTACGTAC AGACCGATGC GCGCGAGACG GCGCCCAACG CGGTGGGTAC GGTCAATTCG TCAGGCGTGT TCACGGCATT GACCAACAGC AATCTGCCGC TCTCGGCGCT GTCGGTGCGT CTGCAAAGCC ATGACCGCCG CATCCGTGAC TATTCGCTGT TCAACCAGAC CGAGCTGACA GCCAAGTTCG ATACGGGTTC GGTCAAGCAC ACGCTGCTGG TCGGCACCGA GTTCGGCCAC GACGGTTACG ACAACCAAAA CTATTACCGC AACGGCTCGT GCAACGGCAC GCCGCTGGCG CAGTCGAGCA TGACAAGCGG CTTCGTCTCG TGCGAGCCAC TGGTCAGCCC GAGCTACACC ACGTCGCCGG CCAGCACGCC GTCGAGCCTG GGTAACCTGC AGGGCGGCTC GGCCAACACG GTGGCTGCGT ACTTCAACGA TTCGATCGAA TTCACCAAGC AATGGAAGGC GGTGGCCGGC CTGCGCTACG ACCGCTATGT GGCGAGCATT TCGAACTCGC TGAATTCAGC GAACACGCCG GCGTCGGCCA AGATCACCGC GCTGCCGTAT GCGCAGCAGA GCGTGAACTT TGTCAGCACG CGCCTGGGCG GCATCTGGCA GCCGACGGAC TGGCAGTCGT ACTACGTGTC GTACGGCACG TCGTTCAACC CGTCATTGGA ACAACTCGTG GGCACCACGG GCCAGCAGGG GTTGGACCCG GAGAAGAACA AGTCGTATGA AGCCGGTGGC AAGTGGGATC TGCTCAACGG CGATCTGTCG GTCAGCTCGG CGCTGTTCCA GATCACCAAG GACAACGCCC GCACACAGAT CGACAGCACG ACGTACACGT CGGCCGGCAA GATCCGCGTG CGCGGTGCGC GCCTGGGTGC CACGGGCCAT GTCACCGACA AGCTGCAGAT CTTCGCGGGC TATACGTACC TGGATGCGCA GATCGTCAAT GGCATCGCCG CGGGCACGCA GGGCATGACG CCGGCCAACA CGCCCAAGCA TTCGGCCACA GTGTGGACGA GCTACGCCTT TGTGCCGAAC TGGGAAGTGG GTGCGGGCGC GTTCTACATG TCCCAGCGGT ATGCCAACAA CACCAACACC GTGCAGACGG GCGGCTTCGT GCGTTGGGAC GCGATGCTGG CCTACCATCA GCCGAAATAC GACGTGCGGC TGAACCTGTT CAACGTGTTC AACAAGACGT ATTACGATGC GCTGATTCCT TCCGATGGCG GTCGCGCCGT GCCGGGCACC GGCCGTGCGG CGATGCTCTC GGTGGTGTAT CGGATGTAA
|
Protein sequence | MNRRTPVASA LLALFATPPV ALAQQAPSSP IAATTTLPEA VVRATAPRDD YNAAKSSISK LPENLRDVPQ SVTVVPKALT DAQGGSSLAD ALRNVPGITI GAAEGGQIGN NINLNGFSAR TDIYLDGFRD RGQYYRDLFA LDSVEVLMGP SSMLFGRGST GGVINQVTKK PKLKAATEIT GSVTTNGLVR ATADVNTPTS DTSAFRIAAM AQNGKTSTRD EMTAQDFGIA PSWRFGIGTP TEVTLSALLQ HNRDMPDYGV PNLNGHPVNV SPKTYYGYTD DRTTQDVASF SANIDHKFSP NLRLRNQTQF NYVQTDARET APNAVGTVNS SGVFTALTNS NLPLSALSVR LQSHDRRIRD YSLFNQTELT AKFDTGSVKH TLLVGTEFGH DGYDNQNYYR NGSCNGTPLA QSSMTSGFVS CEPLVSPSYT TSPASTPSSL GNLQGGSANT VAAYFNDSIE FTKQWKAVAG LRYDRYVASI SNSLNSANTP ASAKITALPY AQQSVNFVST RLGGIWQPTD WQSYYVSYGT SFNPSLEQLV GTTGQQGLDP EKNKSYEAGG KWDLLNGDLS VSSALFQITK DNARTQIDST TYTSAGKIRV RGARLGATGH VTDKLQIFAG YTYLDAQIVN GIAAGTQGMT PANTPKHSAT VWTSYAFVPN WEVGAGAFYM SQRYANNTNT VQTGGFVRWD AMLAYHQPKY DVRLNLFNVF NKTYYDALIP SDGGRAVPGT GRAAMLSVVY RM
|
| |