Gene Rpic12D_3907 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3907 
Symbol 
ID8021594 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp483543 
End bp484424 
Gene Length882 bp 
Protein Length293 aa 
Translation table11 
GC content66% 
IMG OID644832695 
Productinner-membrane translocator 
Protein accessionYP_002983836 
Protein GI241665477 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0559] Branched-chain amino acid ABC-type transport system, permease components 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTGGAAC AGCAACTCGT CAACGCGCTG TCGCTCGGCT GCGTGTATGC GTTGTTCGCC 
CTGGGGTTCA CGCTGGTTTT CGGCATCCTG GGCGTGATCA ACCTGTCGCA CGGCGCCGTC
TTCATGCTCG GCGCCTATGC GGCACTGCAG GTCGTGACGC ACTTTGAGCT GCCGCTGTGG
GCGGCACTGG CTGTCGGCTT TGTCGTAAGC GGCGTGGCCG GGCTCATCAT CGATGTGCTG
CTGCTGCGCC CGCTGCGCCG GCGCAACGCG CCGCACCTGA TCCCGATGAT CGGGACCATC
GGTGCGGGCA TCGCCATCAA TAACGCCATG CAGGGCGTGT TCGGGGCGGA GAACCTGCGC
TTCCCGGCGG GGCTTGTGTC GGATGCGTCG CTGGATCTGG GCGGCATCCA TCTCATGCCG
CTGGAACTGG GCATCATCGT GCTGTCGTTT GCGCTGATGG CCGGGCTGAT GCTGCTGCTC
AAGCGCACGC AACTGGGCCG CGCGCTGCGC GCGATTGCAG AGTCGCCCAA GGCGGCGGCG
CTGCTCGGCA TCAATGTCGA AGGACTGTTC CTGCTGACCT CGTTTGCGGC CGCGGCGCTG
GGCGGGTTGT CGGGCGTGCT GATCGGCCTG TACTCCAACG CCGTGTTCCC GTTGATGGGC
CAGCCGATGC TGCACAAGGG CATCGCGGTC ATCATCCTGG GCGGCCTGGG CGATATCCGC
GGCGCCATGC TGGGCGGGCT GTTCCTCGGG TTTGCCGAGG TGCTGTCGGT GGCCTACATC
GGCTCGACGA TGCGCGATGC CGTGGCGTTC GGCCTGTTGT TCCTGATCCT GCTGGTGCGG
CCGCAAGGGC TGTTCGGCAA GGTGCTGGAA CGCAAGGCAT AA
 
Protein sequence
MLEQQLVNAL SLGCVYALFA LGFTLVFGIL GVINLSHGAV FMLGAYAALQ VVTHFELPLW 
AALAVGFVVS GVAGLIIDVL LLRPLRRRNA PHLIPMIGTI GAGIAINNAM QGVFGAENLR
FPAGLVSDAS LDLGGIHLMP LELGIIVLSF ALMAGLMLLL KRTQLGRALR AIAESPKAAA
LLGINVEGLF LLTSFAAAAL GGLSGVLIGL YSNAVFPLMG QPMLHKGIAV IILGGLGDIR
GAMLGGLFLG FAEVLSVAYI GSTMRDAVAF GLLFLILLVR PQGLFGKVLE RKA