| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3905 |
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| Symbol | |
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| ID | 8021592 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 479170 |
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| End bp | 481851 |
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| Gene Length | 2682 bp |
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| Protein Length | 893 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644832693 |
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| Product | diguanylate cyclase with PAS/PAC sensor |
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| Protein accession | YP_002983834 |
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| Protein GI | 241665475 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.801054 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 28 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACCCA CACTGAAGTC GCAGGCGGCC ATCATGGCAA CCGTCATCAG CGTGACGCTG
GTGAGCCTGT TCGGCTGGTC GCAACGTGAG CCGATCCGCC GCGAGATGAT GGCGCAGATC
CAGGCGCAGC AGACGGCGCT GGTCAGGGAG TCCGCCGACG ATCTCAGGCA GCGGCTGGAC
ATCTACCTGG GCGTGCTCGA ACGTACGGCA CGGCAAATGC ACACCGTTCG CTTCGACACC
CCGGAGCAGG AGGCCACCCT CTTCCGGTCG ATCCGGCCTG CGAGCGGCCT GTTCGATGGC
GTATTCCTCG CCACCTCGGC GGGCAAGGTG ACGGCCACCT CTGCCCACCG TCCGGGAGTC
GTGGGCCTCG ACATTACGGA CCGCGATTAC TTCAAGCAGA TCATGGTGAG GGGCCAGCCC
ACCATTTCTG CGCCGTTGCG CAATCGCATC GGTGGTGAAC CCATCGTCAT CATGGCCGCG
CCCGTGCATG ACAACGACGG CCGGCTGGTC GGGCTGATCG GCGCCGCGCT CTACCTGCTC
AAGCCCAACT TTCTTGGCCT GCTGCGTGAC ATGCGCATCG GCAAGACCGG CCACGTCTAT
CTGATTACGC AAGGCCAGCA CCCGATCTTC GTTGTCCATC CCGATCCCGA CAAGGTGCTC
GCACCGCTCG ATGCCGATCC TGCAGTCGCT GCCGCGCTCC GCTCGGACCC GTCCGCATCG
CCTGAGCGCG GCGGCGACGT CGTCACGATG CAGGACGTGG TCGCAACAGG CTGGACGTTG
GGGGCAGTGT TGCCGGGCGC CGAAGCCAAT CGGCAGCTCT TTGCCATGCA CCAGCGCTTT
CGGCTGTCGC TGGTGTTGCT GGCCGTCCTG ATCGGCGCTT CGGTGTGGGC GGCGATGCTG
TGGCTGCTGC GCCCGCTGGC ACGACTGCAC GCTGCGATGT CGCAACTTTC CACCACGGAC
CTGCGCGATG CGCCACCGCT TGAGCTGCCG GATGCTTCGG CCGAGATCGA CGCCGTGTCG
ACCGCCTTCC GCAAGCTGAT GGACGAGGTC GCGCGCCAGC GTGCCGAGCT CGAGGCCGTG
AACGACGCCT CCCCGCTGGG CCTGTTCCGG GCAGATGTCG AGGGCCGCAT CGTCTACGCG
AATGAAGCTT ATCGCCGGCT CCTCGGCCTC ACGCACGAAG AGGCACTGGC TGACGTGTGG
CTCACGCGTC AGCATCCCAA CGACCGCGAA GCCGCCATGA CGGGCTGGCA CGAAGCGATC
CGCCGCGGCA CCGTCTACAC CGCAGAGCAG CGGGTGCTCG TGCCGGGCGA GGGCGAGCGC
CTGATGGTGG TCAACACGGC ACCGGTACGT GTGGATGGCG AGGTGATCGG CCACGTCGGC
ACCATGGAAG ACATCACCGT GCGGGCACGC GCCCAGCAGG CTTCGCGCGT GCTCACCAAG
ATCCTCGACT CCACGACCGA TTTTGTCGCG CAGACCGACG TGCACGGCAA CGTCACCTAC
ATGAACCCGG CCGGCCGCCG CTTTGTCGGC ATCGCACTGG ACCAGGACAT TCGCGGCATG
ACGGTCGCGG ATTTCTATCC GCCCGCGACG ATGGACTGGC TGCGCGAGGT GGCAGTGCCT
GCCGCTGTGC GCGACGGCGT GTGGATTGGC GAGACGACCG TGCGGGGGCA GCAGCGCGTG
GCGGTGCCCG TCAATCACAT GCTCATCGCG CATCGCGACC CCGCGGGGCA CATGGAGTAC
TTCTCGTCGA TCATGCGCGA CATCACGCAG GACAGGGCGG CTAAGGAGGC ACTGCAGCGC
AGTCGTGAGA CGCTGCAGAC AGTGACCGAT GCCATGCCCG CCCTGGTCGC CTTCATCGAT
GTGGACGAGC GCTTCCGTTT CCTGAACGCC GCGTACGAGA AGGCTTACGG CCAGCCCACT
GCCGCCATGC TCGGCAAGAC GGTCTGCGAG GTGGCGGGTG ACGAGAGTTA TCGCAGCGTG
CGCGATGCCC TGCACCGCGC GCTGGCGGGC GAAACCATCG TCTTCGAACG AGAGCAGCGC
AATCGCGAGG CGTACCGCTG CGAAGAAATC AACTATTTGC CGCAGTTCGA CGCACACGGC
CGTGTTGCCG GTGTGCATTC GGTCACCCTT GATATCACCG AGCGCAAGAA GCAGGAGCTG
CGTCTGCGCG CGCTGACCAC CACCGACCAT CTGACCGGTC TGCTGAATCG CGCAGGCTTT
GAAGCGCGCC TGTCGGCCGC GCTGGACCAG GGGCGCGTCA GTGACACGGC CGGGGCGCTG
CTCCTCATCG ACCTGGACGG TTTCAAGGCC GTCAACGATA CGTACGGTCA TACGATGGGC
GACGCCTTGT TGCGCACGGT CGCGCAGCGG CTGGTGCGCG CGGTGCGCCC CAGCGACGGC
GTGGCGCGCT TTGGCGGGGA CGAGTTCGCC GTCATCCTTG AGAACCTGTC GCAGCCGGAC
GACGCAAAAG CCGTCGCTGC CTCGATCCTT GGCGTATGCA ACCGGCCCTT CCGTCTGGGT
GAACGGGCGG TGCAGGTCGG GGTCAGCATC GGCATTGCCG GTTTCGACGC CCGCACGCTG
GCACAGGGCG TTGTCTTCGA GGCAGCCGAC GAGGCGTTGT ATGAAGCCAA GTCGCGCGGC
AAGGGCCTGT TCGTGAGCGC GGACGAACTG CCGACAGGCT GA
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| Protein sequence | MKPTLKSQAA IMATVISVTL VSLFGWSQRE PIRREMMAQI QAQQTALVRE SADDLRQRLD
IYLGVLERTA RQMHTVRFDT PEQEATLFRS IRPASGLFDG VFLATSAGKV TATSAHRPGV
VGLDITDRDY FKQIMVRGQP TISAPLRNRI GGEPIVIMAA PVHDNDGRLV GLIGAALYLL
KPNFLGLLRD MRIGKTGHVY LITQGQHPIF VVHPDPDKVL APLDADPAVA AALRSDPSAS
PERGGDVVTM QDVVATGWTL GAVLPGAEAN RQLFAMHQRF RLSLVLLAVL IGASVWAAML
WLLRPLARLH AAMSQLSTTD LRDAPPLELP DASAEIDAVS TAFRKLMDEV ARQRAELEAV
NDASPLGLFR ADVEGRIVYA NEAYRRLLGL THEEALADVW LTRQHPNDRE AAMTGWHEAI
RRGTVYTAEQ RVLVPGEGER LMVVNTAPVR VDGEVIGHVG TMEDITVRAR AQQASRVLTK
ILDSTTDFVA QTDVHGNVTY MNPAGRRFVG IALDQDIRGM TVADFYPPAT MDWLREVAVP
AAVRDGVWIG ETTVRGQQRV AVPVNHMLIA HRDPAGHMEY FSSIMRDITQ DRAAKEALQR
SRETLQTVTD AMPALVAFID VDERFRFLNA AYEKAYGQPT AAMLGKTVCE VAGDESYRSV
RDALHRALAG ETIVFEREQR NREAYRCEEI NYLPQFDAHG RVAGVHSVTL DITERKKQEL
RLRALTTTDH LTGLLNRAGF EARLSAALDQ GRVSDTAGAL LLIDLDGFKA VNDTYGHTMG
DALLRTVAQR LVRAVRPSDG VARFGGDEFA VILENLSQPD DAKAVAASIL GVCNRPFRLG
ERAVQVGVSI GIAGFDARTL AQGVVFEAAD EALYEAKSRG KGLFVSADEL PTG
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