Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3889 |
Symbol | |
ID | 8021576 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 459254 |
End bp | 461638 |
Gene Length | 2385 bp |
Protein Length | 794 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644832677 |
Product | PAS/PAC sensor hybrid histidine kinase |
Protein accession | YP_002983818 |
Protein GI | 241665459 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG0642] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 30 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAGCACAT CTGTATCCGG CCTGCTGGCA CCGGCACACC GCGTGCCGCA GGCGCGTGTC GTTTTCTTTG GCGGGAAGCT TCTCGACGTG TTCTGGATTG ATGATCCGTT GACGGGAACA CGCTTGCACG TCAGCGCAGC AGCGCAGACC TGGGGCGTAC GGGCTGAGTC CTTGTGTGGC GATCGCGAGC AGTGGCTGGC CCACGTGCAT CCCGACGACC ACGCGGCCCT GCGCGCGGCA TGGGACGGCC TGGCTCGCGG GCAGGACTTC GTGCTCGAGT ACCGGTGGAT CGGCGTCGAT CACCGGGAGC AGCGCGTGCG CGAGCGTGGC TACCTGATGC CGTCGCCCAA CGGCGGGCCC GCCCACGCCG TCGGCGTGAT CGAAGACGTG ACGCAGCGCC AGCAAACGCT GACCGCACTC ACCGAATCGG AATTCCAACT GCAGTGGTTG ACCGAGAGCG TGCCGTTTCC GCTGGTGCAG ATCGATCCGG AGCACCGCGT GCGCTTTGCG AACCGGGCGT ATGCGCAGCG CTTTGGCATG CTGCCCGACG CGGTGGTTGG TTCGCATCTG CGGGCGGTGA TGGGCGAGGC AGCGTATGCG CGCATCCTCG CCCATCTGGG TGAGGGCTTC GCGGGCCGGC GCGTCGATTT CGAAATCGAA CTGCCGTACC CGGAGGACAT TGGCTCGCGC TTCGTCCACG CAGCCTATTC GCCGCAACAG GGGCCCGACG GGAGCGTGCA GGCCCTCGTA TGTCTGGAGG AGGACATCAC CGAGCGCAAG GAGGCCGAGC GCGAGCGCTA CCGCCACCAG CGCGAATTCG TCACGCTTGT CGAGAATGCA CCGGACGTGA TCGCACGGCT TGATCGGGAC CTGCATTGCG TCTACGTCAA CTGCGCGGTG ATCCATGCCT TTGGTGTGAC GCCGGCCGCC ATGACAGGCC GCACGCTGTC GGCATCACCC TTGCCCGCGA CGGTTGCCGG CCCGCTGGAC GCAGCGGCGC GGCTGGCATT CACCACGGGC GCCGAGCAGA CGCTCACGCT GCACCTGGAT GCCGGGGAGC GTCGCACCGG CATCGCACAT TACAACGTGC GCGTGATTCC AGAGGAGGAC CGCACTGGCA CCATCGAATC TGCGATGCTG ATCGTGTACG ACGTCACCGA GCGCACCGAG GCGGAGCGCG AACGCGATGC GCTGTTGCTG CGCGAGCAGA CGGCGCGTGC GCACGCCGAG GCGGCCACCC TGGCGCGCGA CCAGTTTCTC GCAGTGGTGT CGCACGAACT GCGCTCACCG CTCAACGGGA TCCAGAACTG GACCTATGTG CTGGAGAACC AGTTGTCTGA CGGCTCACCG CTCGTGCAAC GCGCGCTGGC CGGCATCAAG ACCGGCGTAG AGCAGCAGGT ACGGCTGATC GAGGACCTGC TTGACGCTAC GCGCGTCATG AGCGGCAAGT TGCGCCTGAC GCGCGAGCCA TTCGTTCTGA GCCTCGCGAT CGAGCGTGCG CTCAACAGTG TGCGCGCGCT GGCTGCGGAG CGCGGCATTA CGCTGCATGT GGCCAGCCTG CTTGAAGCGC ATGAAATCGA TGGTGACGCA GATCGCGTCG AGCAGATCGT CTGGAACCTG CTGACCAACG CCATCAAGTT CACGCACGAA GGCGGTGATG TATGGCTGTC AGCGGACCTC GTGGGCGAGG TCGCCCGGAT CGTGGTGCGT GACAACGGGC GCGGCATCGG GCCCGCATTC CTGCCCTATC TGTTCGATCC ATTCCGGCAG GCCGATGGTG CGCACACCCG CCGCACCGGC GGTCTCGGCC TGGGGCTTGC GCTGGTCAAG CGCCTGACCG AGCTGCATGG CGGACGCGTG CATGCCCATA GCGATGGCGA GCGCAGCGGC GCGGTCTTCA CGGTTTATCT GCCGCTGCAT GCCGGAGCCG AGTTGACACC GCCGCTCGCC GAGGACCTTG CGCGCAGCGG CCCGCTTCCG TCGCTGGCGG GCTTGCGTGT GCTGCTCGTC GATGATCAGC AAGACGCGCG CGATGCGCTT GCCACGCTGC TGGCGCAAGT CGGTGCCGAC GTGGCCAGCG TGGGGTCGGG CCAGGAAGCC ATGACGCAGC TCGACACGTG GGGTGTGCCG GCGCGGCCGC GGGCCGTGGT GTGCGACATC GCCCTGCCTG ATGAAGACGG TTACGCGATC CTGCAGAAGA TCCGTACCTG GGAGCGGCTG CACGTGCCAG CGGGCGCCTC CCCAATCGCA GCCATTGCCC TGACGGCCTT TGCCCAGCCA GACGATCGCG CGCGTGCGCT GGCGAGCGGT TTTCAGGAGC ACCTGGTCAA GCCCGTGTCG CCTTATGACC TGGTGCGTAC GTTGCGCAAC CTGGCCGCGC CCTGA
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Protein sequence | MSTSVSGLLA PAHRVPQARV VFFGGKLLDV FWIDDPLTGT RLHVSAAAQT WGVRAESLCG DREQWLAHVH PDDHAALRAA WDGLARGQDF VLEYRWIGVD HREQRVRERG YLMPSPNGGP AHAVGVIEDV TQRQQTLTAL TESEFQLQWL TESVPFPLVQ IDPEHRVRFA NRAYAQRFGM LPDAVVGSHL RAVMGEAAYA RILAHLGEGF AGRRVDFEIE LPYPEDIGSR FVHAAYSPQQ GPDGSVQALV CLEEDITERK EAERERYRHQ REFVTLVENA PDVIARLDRD LHCVYVNCAV IHAFGVTPAA MTGRTLSASP LPATVAGPLD AAARLAFTTG AEQTLTLHLD AGERRTGIAH YNVRVIPEED RTGTIESAML IVYDVTERTE AERERDALLL REQTARAHAE AATLARDQFL AVVSHELRSP LNGIQNWTYV LENQLSDGSP LVQRALAGIK TGVEQQVRLI EDLLDATRVM SGKLRLTREP FVLSLAIERA LNSVRALAAE RGITLHVASL LEAHEIDGDA DRVEQIVWNL LTNAIKFTHE GGDVWLSADL VGEVARIVVR DNGRGIGPAF LPYLFDPFRQ ADGAHTRRTG GLGLGLALVK RLTELHGGRV HAHSDGERSG AVFTVYLPLH AGAELTPPLA EDLARSGPLP SLAGLRVLLV DDQQDARDAL ATLLAQVGAD VASVGSGQEA MTQLDTWGVP ARPRAVVCDI ALPDEDGYAI LQKIRTWERL HVPAGASPIA AIALTAFAQP DDRARALASG FQEHLVKPVS PYDLVRTLRN LAAP
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