Gene Rpic12D_3837 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3837 
Symbol 
ID8021524 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012857 
Strand
Start bp407054 
End bp408601 
Gene Length1548 bp 
Protein Length515 aa 
Translation table11 
GC content64% 
IMG OID644832627 
Productxylose transporter ATP-binding subunit 
Protein accessionYP_002983768 
Protein GI241665409 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1129] ABC-type sugar transport system, ATPase component 
TIGRFAM ID[TIGR02633] D-xylose ABC transporter, ATP-binding protein 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.623686 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones22 
Fosmid unclonability p-value0.377794 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCAGTA ACGGCACCCT GTTCGAGATG CGCAACATCG TGAAGTCGTT CTCCGGTGTG 
CGCGCGCTCG ACGGCGTCAG CCTGGCAGTC AAGCCAGGCG AATGCGTCGG TCTGTGCGGG
GAGAACGGCG CCGGGAAATC GACCCTCATG AAGGTGCTGT CGGGGGTCTA TCCCTACGGC
ACCTTCGAAG GCGACATCCT GTGGGAAGGT GAACCGCTGC GCGCGCACTC GGTGCGCGAC
AGCGAGCGCG CCGGCATCGT CATCATTCAC CAGGAACTGA TGCTGGTGCA GCAGCTCTCC
GTCACGGAAA ACATCTTCCT CGGCAACGAG ATCACCAAGC CGGGGGGCCG CATGGACTAT
GACGCCATGC ACGCCAAGGC CGAAGAACTG CTCGCCCGCC TGCGCCTGAC CGACGTGAAC
GTGGCTGCGC CCGTGATGAA CTACGGCAGC GGCCACCAGC AGTTGTTCGA GATCGCCAAG
GCGCTCGCCA AGAACGCGCG CCTGCTGATC CTCGACGAGC CGACCTCGTC GTTGAGCGCC
AAGGAAATCG AGGTGTTGCT GTCCATCATC GAAGACCTCA AGCGCAGCGG CGTGGCCTGC
GTCTATATCT CGCACAAGCT CGATGAAGTG AAGCGCGTGT GCGACACGAT CACGGTCATC
CGCGACGGCA AGCACATCGG CACGCGTCCC GCCGCCGACA TGACCATCGA CAACATCATC
ACCATGATGG TCGGCCGCGA GATGACATCG CTCTTTCCCA AGGTGGAGCA CACCGTGGGC
GAAGTCGTGA TGGAAGCGCG CAACGTCACC TGCTGGGACG TCACCAACCC CAACCGGAAA
CGCGCCGACG ACGTGAGTTT CGCCGTACGC CGCGGCGAGA TTCTCGGCAT TGCCGGGCTG
GTCGGCGCCG GGCGCACGGA GATGGTGTCC GCGCTGTTCG GCGCGTATCC CGGCCGCTCG
ACGGCCGAGA TCAAGGTCGA AGGCAAGCCC GTCAAGGTGA GCTCCCCCGC GCAAGCGATC
GCCAACGGCA TCTGCCTGGT GCCCGAAGAC CGCAAGCGCC ACGGCATCGT GCCGCTGATG
GGCGTGGGCG AGAACATCAC GCTCGCCACG CTGGCGCAGT ACGCGCGCGG CATGCGCGTC
GACAAGGGCG CCGAACTCAC CACCGTCGAC CGCGAGATCA AGCGCCTGCG CATCAAGACC
GCCAGCCCGG CGCTGTCGAT CGCCAGCCTC TCGGGCGGCA ACCAGCAGAA GGCCGTCGTC
ACGAAGATGG TGCTGGCGAT GCCGAAGGTG CTGATCCTCG ACGAACCCAC GCGTGGCGTG
GACGTGGGCT CGAAGTACGA CATCTACAAG ATGATTGCCG ATCTGGCCGC CAGCGGTGTG
GCAATCATCA TGGTCTCTTC CGAGATGCCG GAAATCCTGG GCATGAGCGA TCGTGTCCTG
GTCATGGGCG AGGGCCAGTT ACGTGGCGAC TTCGTCAACC AAGGCCTGAC CCAGGAGCGC
ATCCTGGCTG CAGCAATCAA TGCCGATCCG CAGCTCCGCG CTGCCTGA
 
Protein sequence
MSSNGTLFEM RNIVKSFSGV RALDGVSLAV KPGECVGLCG ENGAGKSTLM KVLSGVYPYG 
TFEGDILWEG EPLRAHSVRD SERAGIVIIH QELMLVQQLS VTENIFLGNE ITKPGGRMDY
DAMHAKAEEL LARLRLTDVN VAAPVMNYGS GHQQLFEIAK ALAKNARLLI LDEPTSSLSA
KEIEVLLSII EDLKRSGVAC VYISHKLDEV KRVCDTITVI RDGKHIGTRP AADMTIDNII
TMMVGREMTS LFPKVEHTVG EVVMEARNVT CWDVTNPNRK RADDVSFAVR RGEILGIAGL
VGAGRTEMVS ALFGAYPGRS TAEIKVEGKP VKVSSPAQAI ANGICLVPED RKRHGIVPLM
GVGENITLAT LAQYARGMRV DKGAELTTVD REIKRLRIKT ASPALSIASL SGGNQQKAVV
TKMVLAMPKV LILDEPTRGV DVGSKYDIYK MIADLAASGV AIIMVSSEMP EILGMSDRVL
VMGEGQLRGD FVNQGLTQER ILAAAINADP QLRAA