Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3835 |
Symbol | |
ID | 8021522 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 404614 |
End bp | 405984 |
Gene Length | 1371 bp |
Protein Length | 456 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644832625 |
Product | Carbohydrate-selective porin OprB |
Protein accession | YP_002983766 |
Protein GI | 241665407 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3659] Carbohydrate-selective porin |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.899229 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGCTTG AACCCCGCTT CGATACCGTG TCGAAGCCCG CGCGCCAACC GGCCGCACGT CGTCAATCCC GCGGCAAGCG CTTTGGTGCT TCCGCCATCG CTGCGGCAGT GCTCGCCCTT GGTGCGGCCA GTGCACATGC GTATGACGTC ACCACCAGCC CGTACCTGCT TGGCGACTGG GGCGGCCTGC GCACCCGACT GGCGGAGCAG GGCGTGACGT TCAACCTCGG CTATGGCAGC GAAGTGGCAC ACAACTTCAG CGGCGGCACC GAGCACCTCA CGCGCTATAC CGATCAGTGG GTAATGGGCG CGGCGCTGGA CCTGCAGAAG CTCTGGGGCT GGAAGGGTGG CACGTTCCAG GCAACCGTTA CCGACCGCAA CGGCCGCAAC CTCGGCTCCG ATGCGAACAT CGGCAACAAC ATGCTGATCC AGGAAGTCTA TGGCCGCGGC CAGACGTGGC ACCTGACGCA GTTCTGGCTG AACCAGAAGC TGCTCGACGA CCGCCTGGAA ATCAAGGCCG GCCGCGTGAC GGTGGGCGAA GACTTCTTCT CGTTCTCGTG CGACTTCCAG AACCTGACCT TCTGCGGCTC GCAGCCGGGC AACCTGGTGG GCAACTACTG GGTGAACTGG CCGACGAGCC AATGGGGCGC CCGCGCCAAG TTGCACACGT CGGCGGAAAC CTACGCGCAG GTCGGCGTGT ATCAGGTCAA CCCGAACTAC GTGGATGACG AGTGGGCCCG CCACAACGGC TGGAAGCTGA ACAACCCGGG CGGCACCACC GGCGCGCTGA TCCCGCTGGA ATTCGGCTGG ATGCCCAACA TTGAAGGGCG TCCGGGCACG TATCGCGTGG GGGTCTGGTA CAACACCTCC AACGGCAAGG ACCTGTACGA AGACGTCAAC GGCAACCCAC GCGGCATCAC CGGCCTGGAC GCGCGTCAGC ACAGCGGCCA GTACGGCGTC TACCTGAACC TGCAGCAGCA GGTCACCGGC ACGGCCGGCG GGCGTGGCGC AACGGTGTTC CTGAACTTCT CGCAGGCCGA TCGTGACACC GCGCAGACCG ATCATCAATT GTCGGTGGGC GTGCAGTACA AGGGACCGTT CGATCGCCTG TCCGACACCA TCGGCTTTGC CGTGGGTGCG ACGCACAATA ACGGCCGCTT TGCCGATTTC GTGCGCCAGA CCAACGCCCG AACCGGCGCA AACACCGTGG TGGGTGACGG TTACGAATAT GTGAGCGAGC TCTACTACAG CTACTCTCCC GTGCCGTCTG TGTACTTCCG TCCTAATCTG CAGTACATCC TGCATCCGGG TGGCACCACG CAGAACAAGA ATGCCTTCGT GATCGGCCTC AAAACGGGCA TCACGTTCTA A
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Protein sequence | MELEPRFDTV SKPARQPAAR RQSRGKRFGA SAIAAAVLAL GAASAHAYDV TTSPYLLGDW GGLRTRLAEQ GVTFNLGYGS EVAHNFSGGT EHLTRYTDQW VMGAALDLQK LWGWKGGTFQ ATVTDRNGRN LGSDANIGNN MLIQEVYGRG QTWHLTQFWL NQKLLDDRLE IKAGRVTVGE DFFSFSCDFQ NLTFCGSQPG NLVGNYWVNW PTSQWGARAK LHTSAETYAQ VGVYQVNPNY VDDEWARHNG WKLNNPGGTT GALIPLEFGW MPNIEGRPGT YRVGVWYNTS NGKDLYEDVN GNPRGITGLD ARQHSGQYGV YLNLQQQVTG TAGGRGATVF LNFSQADRDT AQTDHQLSVG VQYKGPFDRL SDTIGFAVGA THNNGRFADF VRQTNARTGA NTVVGDGYEY VSELYYSYSP VPSVYFRPNL QYILHPGGTT QNKNAFVIGL KTGITF
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