| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3821 |
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| Symbol | |
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| ID | 8021508 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | + |
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| Start bp | 390888 |
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| End bp | 392342 |
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| Gene Length | 1455 bp |
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| Protein Length | 484 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644832611 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002983752 |
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| Protein GI | 241665393 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.467284 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 34 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCTGCC GACCGCGGCT ACGCACCACC GCGCTGGCGG CCTCGTTGAT CGTCTCGCTG
GCCGGCTGCT CGCTCGCGCC GACCTACGAG CGCCCCGCCC TGGACGTGCC GGCGCACTGG
CAAACCGAAG CACCGTGGCG TGCCGCGCAA CCCGCCGACG CCGCGCCCAA AGGCCCGTGG
TGGCAGCGCT TCAACGATCC GCAGCTCGAC AAGCTGATCA CGCAGGCGCT GGCGCATAAC
CAATCGCTCA AGGTCGCGCT GTCGAACCTG GAGCAGGCGC AGGCGCAGAC GCGCGTGGCG
CGTGCCAGCC TGCTGCCGAC CATCACGGCC AACAACAACG ACTCGCGTAC GCGCACGTCG
TCGGAACGGC CGCTCTCGTC GTACACCAGT CCGACCATGT CGACCATCCA GAGCGATCTC
GTGCTGCGCG CCGACGCGAG TTACGAAGCC GACCTGTTCG GCCGCGTGCG CAACACCGTC
GCCAACGCGG CGGCGAGCGA AGAACAGGCC GGCGCCAATT TCGAGAACTT CCGCCTGCTG
CTGGCCGCGC AGGTCGCCAC CACCTGGTAC AACCTGCGCG AGACCGATGC GGAAATCGCC
GTGGTGCAGG AAGGGCTGGC GTTGCAGCGC AAGGCGCTGG ACTTCGTCAC CTCACGGCAT
CAGGATGGCG TGGCTTCGGG CCTCGACCTC GCGCAGCAAC AGGCGCTCGT CGACAGCACC
GCCACGCAGG CCGAACTGCT GACCAAGCAA CGCGCGCAGT ATGAACACGC GCTGGCGACG
CTGGTCGGCA CACCCGCACC CGCCTTCCAT ATCGACCCGA CGCCGCTCAA GGGCACGGCA
CCGCAGATTC CGGTGGCGCT GCCGTCCGAC GTGATCGAGC GCCGCCCCGA CGTGGCCGCC
GCTGAACGCG GTGCCGCTGC CGCGAACGCA CAAGTTGGCG TGGCACGCGC GGCGTTCTTC
CCGAGCGTGA TGCTCAACGG CGGTGCCGGT TGGGAAAGCC GCGATCTCGC CCTGCTGTTT
TCTGCGCCCA CGCTGCTGTG GTCGTTCGGC ACGCAGATCG CCCAGACGGT GTTCGACGCC
GGCCGCACGC GGGGGCGCGT GGACATTGCC AATGCGGCCT ATCAGGGTGC GATCGCCAAC
TACCGTCAGA CGGTGCTGGG GGCGCTGCAG GAAGTGGAAG ATGGACTGGC CGGCCTGCAA
TCGCTGGACC GTGCGGCAAA CCAGGCGCGC CATGCCGTGG AAAGCGCCCG CAAGGTCTAC
GACATTGCCA GCGTGCGCTA CGAGGGCGGC CTCGCCACCT CGTTGGACGT GATCACCGCG
CAGCAATCGC TGCTGAACAA CCAGCGCACG GCGGTGCAGA TTCTCGGCCA GCAGATGACG
ACGAGCGTGT TCCTCGTCAA GGCGGTGGGC GGCGACTGGA ACCAGGCCGC AGCCGCGCCG
ACGGCCGCGC GGTAG
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| Protein sequence | MICRPRLRTT ALAASLIVSL AGCSLAPTYE RPALDVPAHW QTEAPWRAAQ PADAAPKGPW
WQRFNDPQLD KLITQALAHN QSLKVALSNL EQAQAQTRVA RASLLPTITA NNNDSRTRTS
SERPLSSYTS PTMSTIQSDL VLRADASYEA DLFGRVRNTV ANAAASEEQA GANFENFRLL
LAAQVATTWY NLRETDAEIA VVQEGLALQR KALDFVTSRH QDGVASGLDL AQQQALVDST
ATQAELLTKQ RAQYEHALAT LVGTPAPAFH IDPTPLKGTA PQIPVALPSD VIERRPDVAA
AERGAAAANA QVGVARAAFF PSVMLNGGAG WESRDLALLF SAPTLLWSFG TQIAQTVFDA
GRTRGRVDIA NAAYQGAIAN YRQTVLGALQ EVEDGLAGLQ SLDRAANQAR HAVESARKVY
DIASVRYEGG LATSLDVITA QQSLLNNQRT AVQILGQQMT TSVFLVKAVG GDWNQAAAAP
TAAR
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