Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3722 |
Symbol | |
ID | 8021409 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | + |
Start bp | 276861 |
End bp | 279515 |
Gene Length | 2655 bp |
Protein Length | 884 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644832512 |
Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
Protein accession | YP_002983653 |
Protein GI | 241665294 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCAAGACG AACTTTCCTA CCCGCTGTCG GCGCAAAGCC TGCCTGTGCC CCTCTATGTC GTTCTCGAGG GCCGCATCGT GTACGCCAAT GCGGCGGGCG TTTGCATTGT GCGCGCGCGC TCTGCAGACG AGCTGCTGGG AGAACCCTTC TCGCGCTTCT TTCTGGATGC GCCGACCTCG CCTGCCGCGC CCGGCACCGT CGAAGCTCAT GCCATCGCGC CGGAAGTCGC GGCCACACCG GCGGCACGGC TGGCCTCCGT CAGGTCTCCT GAGGCGTCCA CTGAACCGGT GACCGTTCGG CTGACTGTGA CGCCCACCCG CTTCGATGGT CTGCCCGCAC AACAGGTTGT CGTCCATGGG CTGCCCATGC CGCTCGATGC GCAACTGCCG GGCAAGCCGG CCGAGCGCGT CCTGAGTGCA GAAGCCATCG GGGCGGCGCT ACCGCACGAA CATCTGGACC ATCTTTTGTC CACGTTGCCA TCAGCGGCGT CGCTTGGCGA GCGGCTGCAT GCCGTGCTGC GCGCGCTTGA GGCGGCACTA CCGGACGTAC TGTGCGTGGT GGTGCGCGTC GTTTCCGGGC GAGCGAGGCT CTACGGCACG CAGGGTGCGC GCGTGCAACT TGCACGCCGT GGAGAAGCAA CCGCGCCCGA GGTCGATATC GAACTTGCTC GCGTCGCGCC GCTGCTGGGC GCGCTGGCGC CCATCGAACT GATCCGCCTG TCCAATGCAC CAACCGCCCT GCGTGAGACG CTCACGTGCG CGCTGGGCAT CGCGCTGCCC GCGTGGCTGT GCCGCATTCC GGCGCAGCCA CGCGACATGT CGATGGGCGA CGATCTGCTA TGCCTGTTCT ATGCCGCGCC CGCGCGCCTC ACGCCCGACG ACGCTATCCT GCGCAGCGCA TGCGCCCACT ACACCAGCGC CCTGGTCAAG CTCCTGCGCC TGGAGAGCGA ATACCGCCAG GCGCGCGACT TGCGCGATCA GTACCGGCTG GTCGTCAATC ACCTGAGCGA GGGTGTGCTC ACGCTTTCCA CTGACGGGCG CGTGCTCTCA TACAACCGCA GCGCGGCGCA GATCCTCCAC CTCACAGGCA CATCTTGGAA GGGCCGCCCA CGCATGTCCC TGAGCGACAT GGTCTTTGGC GAAGACGGTG CAATCCTGCC TCGCGCGGCA TGGCCAACCA CGCTGGCTGC ACGGACCGGA CGGGCCATCA GCAATGTCGT CGTCGGCGTG CCTGCCGGTA ACGGGCAGAT CGTCTGGCTG CGCGAGTCGG TCCTGCCGAT GTTCTCGCCC GACAGCGCCT CGCCGCATGC GGTGCTGGTC ATCTTCACCG ACATCACCGC CGAACGCTCG ACCTACGAAC AGCTGCGCCT GCTGGAAACC AAGGACTCGC TGACCGGCCT TCCCAATCGC GCTGCTTTCA TCGAGCGGCT CGATGCGCGC CTGGCACTGC CCTCGACCGG CCAGTCGGCG CTGCTATATG TCGGGCTGGA TCACTTCAAG ACGGTCAATG AGGCAATGGG CCACCATATC GGCAATCAAG TGCTGAATGT GGCGGCACAA CGCATCCGCG CGGAGGCAGG GCAGCGCGCG CTGGTGGCGC GGCTGGGCGG CGACCAGTTC AGCGTGGCGA TCGACGATCC CGATGCGGCG GACGCGCTCG CCCTGCAGGT GCTCGGCGCG CTGGCCAAAC CGTTTGCCGG CGGCGAGCGC GAAGTCCACC TGTCGGCCAG CATCGGCATC GCGGTGTTTC CGGAAGACGG CGGCGACGCC TCCACGCTCG TCAGCCGTGC CGAAGCCGCC ATGTATCGCG CCAAGGAGAA CGGCCGCAAC CGCGTCACGC GGTACTCGCG CGCGCTGGAA ACACAGATAC TGCGCCGCTT CACCCTGAAC GAGCGCATGC GCCGCGCACT CGCGCGCGGT CAGGTGAGGC TGGTCTATCA GCCCAAGTAC GCGCTGGCTT CGGGCGAACT CGTGGCGGTG GAAGCGCTCA TGCGCTGGTC GGACCCGGAA CTGGGCGCCG TCTCGCCCAC CGAGTTCATC GCCGTGGCGG AGGAGTCGGG CTATATCCTC GAACTGGGCC GCTGGGCACT GATGCAGGCA TGCGCGAGGG GCCAGGCGTG GGAGCGCAAT TTTGGCTTCA CGGGACGCAT CTCGGTCAAT GTCTCGGCCC GGCAGTGCGA TGCCGGCGTC ATCGAGCGCG ACGTGGACGA GGCTCTCAAG GCATCGGGAC TGACGCCTTC GCGGCTGGAA CTGGAGTTGA CGGAAAGCGT GCTGCTGGCT GATCGCCTCT CGACGCAGCG GCTGTTGACA AGCCTTGCGG CACGCGGCGT GCGCATCTCG CTCGACGATT TCGGCATCGG CTTCTCGTCA TTGTCGTACC TGCGCAGCCT GCCGATCCAT AACATCAAGA TCGACCGCTC GTTCATCAGC GGCGTGCCGG CGGTGGCCGA CTGCGTGGTG CTCACCAAGA CCATCATCGC AATGGCTCGG GCGCTGAACA TGACTGTGAC GGCCGAGGGG GTGGAGACAC CAGAGCAATC GGCGTTTCTT GCCGCGCATG CGTGCGACGA AGTCCAGGGC TTCCTGTTTG GCCGGCCGCT GGAAGTGCCG GCGCTCGAAA GTCTGCTGCG CACTCACAGC CGCGCACAGG CATAA
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Protein sequence | MQDELSYPLS AQSLPVPLYV VLEGRIVYAN AAGVCIVRAR SADELLGEPF SRFFLDAPTS PAAPGTVEAH AIAPEVAATP AARLASVRSP EASTEPVTVR LTVTPTRFDG LPAQQVVVHG LPMPLDAQLP GKPAERVLSA EAIGAALPHE HLDHLLSTLP SAASLGERLH AVLRALEAAL PDVLCVVVRV VSGRARLYGT QGARVQLARR GEATAPEVDI ELARVAPLLG ALAPIELIRL SNAPTALRET LTCALGIALP AWLCRIPAQP RDMSMGDDLL CLFYAAPARL TPDDAILRSA CAHYTSALVK LLRLESEYRQ ARDLRDQYRL VVNHLSEGVL TLSTDGRVLS YNRSAAQILH LTGTSWKGRP RMSLSDMVFG EDGAILPRAA WPTTLAARTG RAISNVVVGV PAGNGQIVWL RESVLPMFSP DSASPHAVLV IFTDITAERS TYEQLRLLET KDSLTGLPNR AAFIERLDAR LALPSTGQSA LLYVGLDHFK TVNEAMGHHI GNQVLNVAAQ RIRAEAGQRA LVARLGGDQF SVAIDDPDAA DALALQVLGA LAKPFAGGER EVHLSASIGI AVFPEDGGDA STLVSRAEAA MYRAKENGRN RVTRYSRALE TQILRRFTLN ERMRRALARG QVRLVYQPKY ALASGELVAV EALMRWSDPE LGAVSPTEFI AVAEESGYIL ELGRWALMQA CARGQAWERN FGFTGRISVN VSARQCDAGV IERDVDEALK ASGLTPSRLE LELTESVLLA DRLSTQRLLT SLAARGVRIS LDDFGIGFSS LSYLRSLPIH NIKIDRSFIS GVPAVADCVV LTKTIIAMAR ALNMTVTAEG VETPEQSAFL AAHACDEVQG FLFGRPLEVP ALESLLRTHS RAQA
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