| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3703 |
|---|
| Symbol | |
|---|
| ID | 8021390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 258486 |
|---|
| End bp | 259229 |
|---|
| Gene Length | 744 bp |
|---|
| Protein Length | 247 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644832493 |
|---|
| Product | protein of unknown function DUF1275 |
|---|
| Protein accession | YP_002983634 |
|---|
| Protein GI | 241665275 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3619] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.257244 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 0.181196 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCATCC AATACCTCCG ACGCCTGACG GGCACCGAGC GCACCGACGA CGCCAACCGG
CGCCTCGGGC AGTCGCTCGC CTTCGTGGCC GGTGCCGCCA ATGCGGGTGG TTTTCTCGCG
GTCAAGCAGT ACACGTCCCA CATGTCCGGC ATCGTTTCGG CGATGGCGGA CGATCTCGTT
CTGGGCAACG CGGTCCTCGT GCTGGCGGGT TTTGCCTCGC TGCTGGCGTT CGTGTGCGGC
GCAGCCTGCA CGGCCGTCAT GGTCAACTGG GGACGCCGCC GCAGCACGCA CAGCGAATTC
GCATTGCCGC TGATGCTCGA GGCCGGGCTG TTGCTGCTCT TCGGTCTGAT GGGCACGTCG
CTCGGGCAAT ACCGCGTGGT GTTCGTACCG GCCACGGTGG CATTGCTGTG TTTCATGATG
GGCCTGCAGA ACGCGATCAT CACGAAAATC TCGAAGGCTG AGATCCGGAC CACGCACGTG
ACGGGGCTGG CCACCGACAT CGGGATCGAG ATCGGCAAGG CGCTGTACTG GAATCAAGGC
CACCGCAATC TGCCCGCCGT GGTCGCCAAC CGGCCCAAGC TGCGGCTGCT GGCCTCGTTG
CTGGCGATGT TCTTCGTGGG CGGGGTGACG GGCGCGCTGG GATTCAAGCA CCTGGGTTAT
GCCGCCACCA TTCCGCTGGC GTCGATCCTG ATGCTGCTGG CCGTGGTGCC GGTGGTGGAT
GACTTGCTGG CACGCCGTCG GTAA
|
|---|
| Protein sequence | MPIQYLRRLT GTERTDDANR RLGQSLAFVA GAANAGGFLA VKQYTSHMSG IVSAMADDLV
LGNAVLVLAG FASLLAFVCG AACTAVMVNW GRRRSTHSEF ALPLMLEAGL LLLFGLMGTS
LGQYRVVFVP ATVALLCFMM GLQNAIITKI SKAEIRTTHV TGLATDIGIE IGKALYWNQG
HRNLPAVVAN RPKLRLLASL LAMFFVGGVT GALGFKHLGY AATIPLASIL MLLAVVPVVD
DLLARRR
|
|---|
| |