| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3694 |
|---|
| Symbol | |
|---|
| ID | 8021381 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 250425 |
|---|
| End bp | 251606 |
|---|
| Gene Length | 1182 bp |
|---|
| Protein Length | 393 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832484 |
|---|
| Product | 3-oxoacyl-(acyl carrier protein) synthase I |
|---|
| Protein accession | YP_002983625 |
|---|
| Protein GI | 241665266 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0304] 3-oxoacyl-(acyl-carrier-protein) synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.303362 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGCTT CTCCCGTCTA TCTGCATGCA CTCGGCATGG TCAACGCGCT GGGCGATGAT
GTGGGCGCCA TTTGCCTCCG CCTGGCAACC GGGCATGCGC CTGGCATGCT GGCAACCCAT
CGCCCCGATG GCTCGACAGC CGTCGTCGGA CGCGTGCTGG CGCCGCTTGA AGTCCGGCCA
CCCAGGCAGC TGTCCGCTTA CGACTGCCGC AACAACCGGC TGCTGCTCGC CGCGCTTGCA
CAGATCCAAG CCGAACTGGA TGCCGCACAC GCCAGGTACG GCCCACACCG GATCGGCATC
GTGCTCGGCA CCAGCACGTC CGGCATCGAT GCGGCAGAGG TTGCACTGCG CCATGCGAAG
ACGCACGGGA CGCTGCCCGA AGCCTTTGAC TATCGCCAGA TGGAGATCGG CACGCTCGCA
CCGTTCGCAG CTGCGGCGCT GGGCGTCACG GGTCCGGCCT ATACGGTCTC CACGGCGTGC
ACGTCCAGCG CCAAGGCCTT CGCATCGGCG CGCCGCCTGC TGCAATTGAA CCTGTGTGAT
GCAGTGGTCG TTGGCGGCGC AGATTCTCTG TGCGAACTGA CGCTGCAGGG CTTTGCCTCG
CTGGAGTCGA CCAGCGCCAC GCATACCAAC CCGATGAGCC GCAACCGCGC CGGGATCAAC
ATTGGCGAGG GCGCAGCCGT CTTTCTGATG ACACGCGAGC CGGGCCCCGT ACGCCTGGCA
GGCGTGGGCG AATCAAGCGA CGCCCATCAC ATCTCCGCCC CTGATCCGAC CGGCGCCGGC
GCCGAGCGGG CCCTGTGCGC CGCCCTGGCC GATGCCGGGA TCGAGGCCGA CGCCCTCGGC
TACGTGAACC TGCATGCCAC GGCCACGCGC AAGAACGACG AGATGGAAGC GCACCTCATG
GCGCGGGTGT TTCCGAACGG CGTACCGACC AGCGGCACCA AGCCACTGAC AGGACACATG
CTGGGTGCGG CCGGTGCCAC CGAACTTGGC TTTGCATGGC TGGCACTCGC GCGCGATGGC
ACCCCCTTGC CGCGCCACGT GTGGGACGGT GAAGCGGACC CTACCCTGCC CGTGCTCGAC
CTGATCGAGA ACACGCGTCG CCTGGCGTCA GGCCGATACG TGATGAGCAA CTCGTTTGCC
TTTGGCGGCA GCAATGCGAG CCTGATCCTT GGACAAGGAT GA
|
|---|
| Protein sequence | MMASPVYLHA LGMVNALGDD VGAICLRLAT GHAPGMLATH RPDGSTAVVG RVLAPLEVRP
PRQLSAYDCR NNRLLLAALA QIQAELDAAH ARYGPHRIGI VLGTSTSGID AAEVALRHAK
THGTLPEAFD YRQMEIGTLA PFAAAALGVT GPAYTVSTAC TSSAKAFASA RRLLQLNLCD
AVVVGGADSL CELTLQGFAS LESTSATHTN PMSRNRAGIN IGEGAAVFLM TREPGPVRLA
GVGESSDAHH ISAPDPTGAG AERALCAALA DAGIEADALG YVNLHATATR KNDEMEAHLM
ARVFPNGVPT SGTKPLTGHM LGAAGATELG FAWLALARDG TPLPRHVWDG EADPTLPVLD
LIENTRRLAS GRYVMSNSFA FGGSNASLIL GQG
|
|---|
| |