| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3675 |
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| Symbol | |
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| ID | 8021362 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | - |
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| Start bp | 232434 |
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| End bp | 234392 |
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| Gene Length | 1959 bp |
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| Protein Length | 652 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644832465 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_002983606 |
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| Protein GI | 241665247 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.864277 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGCTCC CCCGAAAGAT TTGCGCGCCG CTGCCGTTGT ATCTGACCAG AAGGCGCCGG
CTGGGTCCGG CCCGCAGACA TGCCTTGCTG GAAGCCGCTT TGAATTCCTT GACTTTTCCC
ACCCGTGGTG CCGGGTTGTC GATCGTTGCC GACGGCCTGC CGGCCGATTG TCCGGCGCGT
GGCGAGCCAC CGGGTTTCAG CCCGAAGCTG GATCTGCTGT CGATGGTCAA CGCGCTGACC
GAGGGCATCC TGGTGTGTGG TGCAGACCGG TGCGTCAGCT ATGCCAACCC AAGCGCGGCC
CGGCTGCTGG GGCTGCCGCT AGACGAACTG GTTGGACGAC CCTTGCCGAC CGTTGTCCAC
GCGGCTGTGG ACGAGTTCGA GACCTCCATC CATGAGACCG ACTGGCCCGA CCTCGACGTG
CTGGCGGAGG GCCAGCCGCA GTTGAACCAG ATCTTCGGGC TGCACTGCCT GGACGGCCGC
ACCGTGTGGG TGTCCAGCAA TTGGACGCCG CTCTACACGG AGGGCGGGCA CTCGACGACG
GCCGCGCCCG GAGCGGCCCG GCAAGGGGCG CGGCCGTATT CGGTCCTGGT GTCGCTGGTT
GACATCACGC AGATCCGCGA AGCGCAGCAG CGCATCCGTC ATCTGGCAAC GCACGACACG
CTCACGGGCC TGCTCAACCG CTCGGCGCTC GAAGACCGGC TGGAGCATGC GCTGGCGCTG
GGCCGACGCA ATCGCTCGCG CGTCTCCGTC ATGTTCCTGG ACCTGGATCG CTTCAAGAAC
GTCAACGACA CACTGGGCCA TCAGTTCGGC GACATGCTGC TGCGCGAGGT GGCCGCGCGT
CTGCAAGCCT GTGCGCGTGA GGCCGACACC GTGGCCCGCC TGGGCGGCGA CGAATTCGTC
GTCATGCTGG AGTCGCTGGA CGCCATGGGC ACGCGCCGCG TGGCCGAACG CATCCTGTCG
GCGATCGGCG CGCCTTTCCA TATCGAGGGG CAGGAACTGT ATCTGGGCGT GTCGATCGGC
ATTGCCGTGG CGCCACGCGA CGGCGATGAC CCCCACACGC TGCTGCGCAA GGCCGACGCC
GCCATGTATC TGGCCAAGGA GCGCGGCCGA AATAACTTCC AGACGTTTAC CAGCGACCTG
GACGATCGCG TTTCGCGCCG CTTCCGGATC GAATCCGGCC TGCGCCGTGC CAGCGACCGT
AACGAGTTCT ATGCCGATTA CCAGCCGCGC GTGGACGTCC GCAGCGGCCG GATCGTCGGG
GTGGAAGCGC TGATCCGGTG GAATTCGGCC GACTTTGGCC GGATGATGCC CGGCCAGTTC
ATTCAGGACG CCGAAGAGAC CGGACTGATC GTCGAGATAG ACCGCTGGAT CCTGCGTGCG
GCCTGCGATC AGCTTGCGCG CTGGCGCCGC ATCGGGCTGC CCCACCTGCG CATGTCGATC
AATCTGTCCG GCCAGGCCTT CAGCTCCGGA AAACTGAGCG ACATGGTGCG CAGGGCGCTG
TCCGCCAGCG GGCTCCCCGG CGACGCCGTC GAACTGGAGA TGACCGAGGG CATCCTCATT
CGGGATGACC CGTCGCTGCA TGCCCTGCTG ACCGAGTTGC GCGCGATGGG TGTGTCACTG
GCGCTGGATG ACTTCGGTAC CGGGTATTCG TCGCTGTCGT ACCTGCATCG CTTCCCGATC
GATACGCTCA AGATCGACCG CTCGTTCGTG CAGGACCTGC CGCACGTGGC CGAACGCGCG
GCCATTACGC GGGCCATCAT CATGATGGCG CAGGCGATGG GCATGAGGAC TGTGGCCGAG
GGTGTGGAGA GCACCGGACA GCTCGACTTC CTGCGCGAGG TTGGTTGCGA TGAATTCCAG
GGCTACTTGC TCACGCGGCC GCTGGAGCCC GGCGCGGTGC AAAATCTGGT GCGCGAGAAC
GCCCGCCGCT ACGGTGAGCG CATCCCGCGG TTCCTGTAG
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| Protein sequence | MALPRKICAP LPLYLTRRRR LGPARRHALL EAALNSLTFP TRGAGLSIVA DGLPADCPAR
GEPPGFSPKL DLLSMVNALT EGILVCGADR CVSYANPSAA RLLGLPLDEL VGRPLPTVVH
AAVDEFETSI HETDWPDLDV LAEGQPQLNQ IFGLHCLDGR TVWVSSNWTP LYTEGGHSTT
AAPGAARQGA RPYSVLVSLV DITQIREAQQ RIRHLATHDT LTGLLNRSAL EDRLEHALAL
GRRNRSRVSV MFLDLDRFKN VNDTLGHQFG DMLLREVAAR LQACAREADT VARLGGDEFV
VMLESLDAMG TRRVAERILS AIGAPFHIEG QELYLGVSIG IAVAPRDGDD PHTLLRKADA
AMYLAKERGR NNFQTFTSDL DDRVSRRFRI ESGLRRASDR NEFYADYQPR VDVRSGRIVG
VEALIRWNSA DFGRMMPGQF IQDAEETGLI VEIDRWILRA ACDQLARWRR IGLPHLRMSI
NLSGQAFSSG KLSDMVRRAL SASGLPGDAV ELEMTEGILI RDDPSLHALL TELRAMGVSL
ALDDFGTGYS SLSYLHRFPI DTLKIDRSFV QDLPHVAERA AITRAIIMMA QAMGMRTVAE
GVESTGQLDF LREVGCDEFQ GYLLTRPLEP GAVQNLVREN ARRYGERIPR FL
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