Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3640 |
Symbol | |
ID | 8021327 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 200687 |
End bp | 201919 |
Gene Length | 1233 bp |
Protein Length | 410 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 644832430 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002983571 |
Protein GI | 241665212 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAAACCA CCGCAAACGG CCCGGCCGCC GCCCCCACGC AGGCCGACAA GACCGGCTTT GGCGTGATCG GCGCCATCAG CTTCGCGCAT TTCCTCAACG ACATGATGCA GTCGTTGATC CTGGCGATTT ATCCGCTGCT CAAGGGCAAT TTCCACCTCG ACTTCTCACA GATCGGGCTG ATCACGCTCA CCTACCAGAT CACCGCGTCG CTGTTGCAGC CGATGGTCGG GCTTTACACG GACAAACACC CGAAACCGTA CTCGCTGTCG GTGGGCATGG GGTTCACGCT GGTGGGGCTG GTGCTGCTGT CGATGGCGCC CAACTATGGC ACGCTGCTGC TTGCTGCCGC GCTGGTTGGC ACCGGCTCGT CGATCTTTCA TCCGGAGTCT TCGCGCGTGG CACGCATGGC TTCGGGCGGC CGACATGGGC TTGCGCAGTC GCTGTTCCAG GTGGGCGGCA ATGTGGGCAG CGCGATGGGG CCGCTGCTTG CCGCCGCCAT CATCATGCCG TACGGGCAGC ACAGCCTGGC GTGGTTCTCG CTTGCCGCGC TCGTCGCCAT CTTCGTGCTC TATCACGTGG GAGGCTGGTA CCAACGTGAA CGCGCCGCGG GGCATGCTCG CAAGGCCGGC GCGCACGCAC ATGCGACGGC AAGGCTGCCG GGCCGGCAGG TGGCGTTTGC GATGACGCTG CTGGTCGTGC TGCTGTTCTC GAAGTACTTC TATCTGGCCA GCCTGAACAG CTACTACACG TTCTACCTGA TCACGAAATT CCACCTGTCG GCGCAGGCGT CGCAGATGTT CCTGTTCCTC TTTCTGTTTT CAGTGGCCGT TGGCACGATC GTCGGCGGCC CGATCGGGGA TCGCGTGGGG CGCAAGATCG TGATCTGGGT ATCCATCCTC GGTGTGGCAC CGTTCACGCT GATGCTGCCC TATGCCAACC TGTTCTGGAC GGCCGTGCTG ACCGTGATCA TCGGGTTGGT GCTGGCCTCG GCGTTCTCTG CCATCCTCGT GTACGCGCAG GAGCTGATTC CCGGCAAGGT GGGCATGGTG TCCGGGTTGT TCTTCGGATT CGCGTTCGGG CTGGGCGGCA TCGGCGCCGC AGTCCTGGGC AAGCTGGCGG ACGCGACGGA TATCTACAAC GTCTACCACC TGTGCTCGCT CCTCCCGCTG ATCGGTCTGT TGACGGTCTT CCTGCCGGAT ATCGAGCGCA AGGGGCGCCT GCATACGGCT TGA
|
Protein sequence | MQTTANGPAA APTQADKTGF GVIGAISFAH FLNDMMQSLI LAIYPLLKGN FHLDFSQIGL ITLTYQITAS LLQPMVGLYT DKHPKPYSLS VGMGFTLVGL VLLSMAPNYG TLLLAAALVG TGSSIFHPES SRVARMASGG RHGLAQSLFQ VGGNVGSAMG PLLAAAIIMP YGQHSLAWFS LAALVAIFVL YHVGGWYQRE RAAGHARKAG AHAHATARLP GRQVAFAMTL LVVLLFSKYF YLASLNSYYT FYLITKFHLS AQASQMFLFL FLFSVAVGTI VGGPIGDRVG RKIVIWVSIL GVAPFTLMLP YANLFWTAVL TVIIGLVLAS AFSAILVYAQ ELIPGKVGMV SGLFFGFAFG LGGIGAAVLG KLADATDIYN VYHLCSLLPL IGLLTVFLPD IERKGRLHTA
|
| |