| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3611 |
|---|
| Symbol | |
|---|
| ID | 8021298 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | + |
|---|
| Start bp | 168644 |
|---|
| End bp | 169660 |
|---|
| Gene Length | 1017 bp |
|---|
| Protein Length | 338 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644832402 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_002983543 |
|---|
| Protein GI | 241665184 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCCTCG CGCTGAGCAA GTGCGGCGTG CTGGGGTATG CCTTCGCCAT CCTGCTCGGC
TGGGCGACCG GCATGCTGCA GACGTTGACG CCGCTGGTCG CCGCACTGGG CGTGATGCTG
GTGATCGTGC TGACGGCGCA ACGTCAGCGG CACACGGGCC TGTGGGCGCC ACTGGCATTG
GCACATCTGC TGACCGAGGA GGTCGCCATC GTGCTGTTCG GCCACCAGGC CGGGCTCGCG
TGGGTGCTGC CCGCGTTCTA CCTGATGCCG CTGGCCACCA GCCCCGCATG GCTGACCCGG
CGCGATTTCG TCATTGCCAT GATGCTATGC GCCACAGGAC CGCTGGTGGC CATCTTCACG
GCCAGCGCGC CAAAAGCGGA CATCCACAAG GCGTGGCTCG GCCTGTTGCT GTACCAGCCC
ATCTGCATTG CAGCCGCTGC GGTCATTCAC CACTACCTGC TGCGCGCGAT GGCGCGCCAC
TTCGCCGCTG AACGCTCGTT GGCCGACCGC GCAAATACGG ACCACCTGAC CGGCATGCTC
GCGCGCCAGC GCTTCTTCGA GCTGGGCGGC TTTGCCGTAG AGCGCGCCCG GCATCATGCC
GAGCCGCTGT GCGCGCTCTA CCTCGATGTC GATCACTTCA AGACCATCAA CGACACGTGG
GGCCACGCCG CCGGCGACGA GGCGTTGGTC GCGCTGTCGG AAGCGCTCGC GCGGGTGCTG
CGCCCAAAGG ACTTGTTCGG CCGTCTGGGC GGGGACGAAT TTGCCGTGCT GTTGCCGGGC
TGCGGACTCG ACGACACACT CGCCGTGGTC GACAGAATCA AGGCAGCCGT GGCGGCCAGC
GAATCGCCCG TTGGCCCACT GACGATCAGC GTGGGGGCCG CACCCTTGCG CCGCGGTCAA
GACCTTGCCC GCCTGCTGGC CGATGCCGAC GTTGGTCTGA TGGAAGCCAA GCGGCAGGGG
CGCAACCGCG TCTGCGTACC AAGCGATCTG CTGCACAGCC CCGAGCTGGC GCAGTGA
|
|---|
| Protein sequence | MILALSKCGV LGYAFAILLG WATGMLQTLT PLVAALGVML VIVLTAQRQR HTGLWAPLAL
AHLLTEEVAI VLFGHQAGLA WVLPAFYLMP LATSPAWLTR RDFVIAMMLC ATGPLVAIFT
ASAPKADIHK AWLGLLLYQP ICIAAAAVIH HYLLRAMARH FAAERSLADR ANTDHLTGML
ARQRFFELGG FAVERARHHA EPLCALYLDV DHFKTINDTW GHAAGDEALV ALSEALARVL
RPKDLFGRLG GDEFAVLLPG CGLDDTLAVV DRIKAAVAAS ESPVGPLTIS VGAAPLRRGQ
DLARLLADAD VGLMEAKRQG RNRVCVPSDL LHSPELAQ
|
|---|
| |