Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Rpic12D_3480 |
Symbol | |
ID | 8021166 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia pickettii 12D |
Kingdom | Bacteria |
Replicon accession | NC_012857 |
Strand | - |
Start bp | 23263 |
End bp | 24855 |
Gene Length | 1593 bp |
Protein Length | 530 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644832273 |
Product | major facilitator superfamily MFS_1 |
Protein accession | YP_002983415 |
Protein GI | 241665056 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 0.129698 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCGTCC ACACTGCGCT ACCGCACTCC CATACCCAGG TCTTGCCGTT CAAGGAATCG CTGCTTGCGA TGATCGGCAT CTGTTTTGTC GTGGTGCTGG TGGCATTCGA CCAGACCGTG GTCGGTACCG CGTTGCCGAC GGTCGTGGCC GAACTCAAGG GTTTTGAGTT GTATGCCTGG GTGGCGACGT CGTACCTGCT GACCTCGGTG GTCACGGTGC CGATCTTCGG CCGGCTGGGA GACTTCTACG GCCGCAAGCC GTTCGTGATC GCATCCATCG TGGTGTTCAC GCTGGCGTCT GTCATGTGCG GCATGGCCGG CAGCATGAAC TTTCTGGTGT GGTCGCGCGC GCTGCAGGGC ATCGGCGGCG GCATGCTTGT CGGCACGGCG TATGCCTGCA TTCCCGATCT GTTTCCCGAT GCGCGCGTAC GTTTGCGCTG GCAGGTCATG CTGAGCGCGT CGTTCGGTAT CGCCAATGCC ATCGGGCCCA CGCTGGGCGG ATGGATGACG CAGGCGTTCG GTTGGCGCTC CGTGTTTTAT GTGAACGTGC CGTTCGGCGC GTTGGGGCTA TGGTTTGCCT GGCGGTTTCT ACCGCATTTG CGCCAGAACG CGCATGTCGG CCGCATCCGG CTGGATTGGC AGGGCGCGGT GCTGATCACC GTGGCACTCG GTGCGTTGCA GCTCTTTGTG GAATGGCTGC CGCGCCATGG CGTGTCGGGG CCACTGTTCG GGTGGCTGGC CTTGTCGGCC GCGGCATTCT TTGGCTTGTG GTGGTGGGAG CAGCGCGCCG AGCAGCCGCT GTTGCCGTTC GACATGCTGC GTAACCCTTC GCTGGCGGCG CTGTTCGTGC TGGCGACGCT CTCGGGCTTT TCGATGTTTG CGGTGCTGTT CTACGCGCCG CTGCTGTTCC AGGGCGGGTT TGGCATGTCG CCGCAGGAGG CAGGGCTGGT CATCACACCG CTGGTGGTCT GCATTACCCT CGGCAGCATC ATCAATGGGC GCATCGTCAC GCGCATTCCC AAGCCGAACG CCATGCTATA TGCCGGGTTT GCGCTGCTGA CGTTGGCGCT GGCCGGCATG GCGGTGTCGT CCAAGGCAAT GCCGCATGCC GTGTTGACGG GGCTGATGCT GCTGGCGGGC CTCGGGCTGG GTTTTGTGTT GCCCAACCTG ACCGTGTTTG CACAGCAGAC GGCGGGGCGT GCGCACCTGG GGATCGCCAC GGCGCTGCTG CAATCGCTGC GCATGGTGGG CGGCATGGTG GGCACCGCGC TGGTCGGCAC GCTGGTGAGC GAGCGCTATG CCGCAGGGGT GGGCGAGGCG CTGCGCGCTG ACGGTGCGAC GCAATGGCTG CGCCAGCTTG CCGATCCCGA GATTCTCATT GATCATGACG CGCAAGCTGC CCTGCTCACA CAGATGCACG CAGCGGGCCA CGATGGCGCC GCTCTTGTCG AGGCGGCCCG TCACGTGCTG GTCAGCGCCA TCCACATCGG CCTGGTCGCC GCAACCGTGG TCGCCCTCGT GGCTCTCTGG CGCGTGTGCC GTGTGCCGCC GGTGGTGTTG CATCATGTCG AGCCCGTGCA ACACACCGAA TAG
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Protein sequence | MAVHTALPHS HTQVLPFKES LLAMIGICFV VVLVAFDQTV VGTALPTVVA ELKGFELYAW VATSYLLTSV VTVPIFGRLG DFYGRKPFVI ASIVVFTLAS VMCGMAGSMN FLVWSRALQG IGGGMLVGTA YACIPDLFPD ARVRLRWQVM LSASFGIANA IGPTLGGWMT QAFGWRSVFY VNVPFGALGL WFAWRFLPHL RQNAHVGRIR LDWQGAVLIT VALGALQLFV EWLPRHGVSG PLFGWLALSA AAFFGLWWWE QRAEQPLLPF DMLRNPSLAA LFVLATLSGF SMFAVLFYAP LLFQGGFGMS PQEAGLVITP LVVCITLGSI INGRIVTRIP KPNAMLYAGF ALLTLALAGM AVSSKAMPHA VLTGLMLLAG LGLGFVLPNL TVFAQQTAGR AHLGIATALL QSLRMVGGMV GTALVGTLVS ERYAAGVGEA LRADGATQWL RQLADPEILI DHDAQAALLT QMHAAGHDGA ALVEAARHVL VSAIHIGLVA ATVVALVALW RVCRVPPVVL HHVEPVQHTE
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