| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3473 |
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| Symbol | |
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| ID | 8021159 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia pickettii 12D |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012857 |
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| Strand | - |
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| Start bp | 16890 |
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| End bp | 18467 |
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| Gene Length | 1578 bp |
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| Protein Length | 525 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 644832266 |
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| Product | RND efflux system, outer membrane lipoprotein, NodT family |
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| Protein accession | YP_002983408 |
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| Protein GI | 241665049 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0809824 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 0.12883 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGACAG GTCGACACGC CCGCGGCCAA GCGGTCGCCC ATCCTGCCCG GTGCGTACTC
GCTGCGCTGA CGGCACTGGT GGCCGGCTGC GCGGTCGGGC CCGATTACAG CCCCCCGCAA
CTGAGCGGCA CCGAAGCGCC CCGAGGGTGG CATGCCACGC TGCCGCATCA CGGCAGCCGC
CTCGCGCTGG CGCGCTGGTG GGAGCAGTTC CAGGACCCGG TGCTCGCACA GCTCGTAGAG
CAAGCCGACG CCTCCAGCCC CACCGTTGCG CAGGCGGTGG GCCGCGTGCG CGAAGCCCGC
GCGGTGGTGT CCAGCAGCCA GGCCGCGCTG CTGCCGCAAT CGAAAGGGAG CGGCTCGGCC
ACGCGGCAGG GCGGGTTTGG CGGCAGCCAG TTCGGCACTG GAGCGGGTTT TGGCGGATTG
TCCTCCGGCG CTGCGCTGGG CCCTGCGCTG GGGCTGGGCA CCATCACGAC GCTGGCGGCG
CAAGCCGATG CGTCGTGGGA GATCGACCTG TTCGGTGGAA AGCGCCGCAG CCTGGAGGGC
GCAGATGCCC GCCTGGCGGC CAGCGAGGCT GACTGGCACG ACGCCCGCGT GTCGCTTGCG
GCGGAGGTCG CCAGCACCTA TCTGCAGCAG CGCCAATGCG AAGCGCTTGT CGGGATTGAT
GCGGCGACGC TTGCCTCGCG GCAAGAGACG CTGCAACTGA CAGAGCGGAA ATTCCGCGCG
GGTTTTGCCG CGCCGGCCGA CGACGCCCAG GCGCAGGCGA GCGTGGCCGA CGCCATCAAC
GTGCTGGAAG GCCAGCGCGC GCAGTGCGCA CAGGGCATCG ACAAGCTCGT CACGCTGACC
GGACTCGATC ATGACGCGCT GAACGGGCTG CTCGCCAAAG CAAACGCGCA GATCCCTGCG
CCGCCTGACG CCGGTGTGCC AGATGTGCCG GCACGCGTAT TGTCACAGCG ACCGGACGTG
GCATCGGCAG AGCGCGCTGT CGCCGGCGCG AGCGCGGACA TTGGCGTGGC GGTGGCCAGC
CGCCTGCCGT CGATCACGCT GGCGGGCTCC ATCGGCATCA ATGCGTTCCG CTTCAGCGGA
CAGTCTGCGA CGACCAAGTC CTGGTCGTTC GGGCCCTCGG TGTCACTGCC GATCTTTGAT
GGCGGGGCGG GTGCGGCGCG CGTGGAAACC GCGCGTGCCC GCTACGATCA GGCACTGGCC
AGCTATCGGG CCAAGGTGCG GCAGGCCGTG CAGGAAGTGG AAGACGCGCT CGTGCGCCTG
GACGCCGCCG ACCGCAGGCT GGATGCCGCG ACCAAGGCGG ACGCGCAGTA TGCCAAGGTG
CTGGACGCGG CCAGTGCGCG TTATCGCCTG GGTGCCGGCA GTCTGCTCCA GCTCGAGGAT
GTGCGGCGCA CCGCGTTGCA GGCATCGCAA TCGCTTGCCG CCGTCAGGCT TGAACGAGCA
CAGGCATGGG TTGCCCTCTA CAAGGCTGTC GGCGGGGGAT GGCGCGAAGA CGCCGCCGGT
GCGAACGGCC AACCAGATCC CTCCAACGCT CCCGCACGGG CTGCTCAGCG CCCTGCGCCC
AACGGAAACG CTTCATGA
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| Protein sequence | MKTGRHARGQ AVAHPARCVL AALTALVAGC AVGPDYSPPQ LSGTEAPRGW HATLPHHGSR
LALARWWEQF QDPVLAQLVE QADASSPTVA QAVGRVREAR AVVSSSQAAL LPQSKGSGSA
TRQGGFGGSQ FGTGAGFGGL SSGAALGPAL GLGTITTLAA QADASWEIDL FGGKRRSLEG
ADARLAASEA DWHDARVSLA AEVASTYLQQ RQCEALVGID AATLASRQET LQLTERKFRA
GFAAPADDAQ AQASVADAIN VLEGQRAQCA QGIDKLVTLT GLDHDALNGL LAKANAQIPA
PPDAGVPDVP ARVLSQRPDV ASAERAVAGA SADIGVAVAS RLPSITLAGS IGINAFRFSG
QSATTKSWSF GPSVSLPIFD GGAGAARVET ARARYDQALA SYRAKVRQAV QEVEDALVRL
DAADRRLDAA TKADAQYAKV LDAASARYRL GAGSLLQLED VRRTALQASQ SLAAVRLERA
QAWVALYKAV GGGWREDAAG ANGQPDPSNA PARAAQRPAP NGNAS
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