| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3471 |
|---|
| Symbol | |
|---|
| ID | 8021157 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012857 |
|---|
| Strand | - |
|---|
| Start bp | 12656 |
|---|
| End bp | 15757 |
|---|
| Gene Length | 3102 bp |
|---|
| Protein Length | 1033 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644832264 |
|---|
| Product | acriflavin resistance protein |
|---|
| Protein accession | YP_002983406 |
|---|
| Protein GI | 241665047 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.0282385 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.0800862 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACTTTT CCGCGTGGGC GATCCGCAAG CCGATTCCGC CGATCCTGCT GTTCATCCTG
ATGACGGTAG CGGGGCTGGT GTCGTTCAAG ATGCTGTCGA TCCAGAACTT TCCGGACATC
GACTTTCCCG CTGTGTCGAT CACGGCGAGC TTGCCGGGTG CCACGCCCAC GCAGATGGAG
ACCGAGGTCA CGCGCAAGAT CGAGGACAGC GTTGCCAGTA TCGGTGCGAT CAAGCACATC
ACGTCCACCG TCAACGACGG CAGCTCGACC ACGATGGTGG AGTTCGAGTT GGAAAAGGAT
GTGCAGGAGG CGGTGAACGA TGTGCGCGAC GCCGTCAGCC GCATTCGCGC GCAGTTGCCT
TCGGATGTGC AGGAGCCGGT CATCTCGCGC GTGACCTTTG CAGGCATGCC AGTGCTGACG
TATGCAGTGG ATGCGCCCGA CATGGACGCT GAGGATCTTT CCTGGTTTGT CGATAACACC
ATCAGCAAGC GCCTGCTCTC GGTGCATGGC GTGGCCAAGG TCACCCGCCA GGGCGGGGTA
GACCGCGAGG TGCGCGTCCA ACTCGATCCG GTGCGCCTGC AGGCGTTGAA TGTCACGGCG
GCCGACATCA GCGCACAGGT GCGCGGCGTG CAGCAGGAAG CGCCGGGCGG GCGCGGCAAT
ATCGGCGGGC AGGAGCAGGC CGTGCGCACG CTGGGCACTG TGAAGAGCGC GCGCGAGCTG
GCGCAGATGG ACATTCCGCT CTCCGACGGC CGGCGCATCC GTCTCTCCGA TGTGGCCGAC
GTGCGCGACA CCGCCGCCGA GCCCCGCCAA ATGGCCTTGC TCGACGGCAA GCCGGTGGTG
AGCTTTCAGG TGTTCCGATC GCGCGGCGCG AGCGAGATCT CGGTTGCGAA GGGGGTTCGC
GAAGCGCTGG CCCGGCTGCG GACAGAGCGC CCGAACGTGC ACGTGACCGA GGTCTACAAC
ATGGTCAAGC CAGTGTCGGA TGCCTATGCC GCGTCAATGC ACGCGCTGTA CGAAGGCGCG
ATCCTGGCGG TGCTGGTGGT GTGGCTGTTC CTGAGGGACT GGCGGGCGAC ATTCGTGTCT
GCGGTGGCGC TGCCGCTATC CATCATCCCG ACCTTTGCAG CCATGAACAT GCTGGGCTTC
ACGCTCAACG GCATCACGCT GCTGGCGCTC ACGCTGGTGG TCGGGATCCT GGTCGACGAT
GCCATCGTCG AAGTGGAAAA CATCGTGCGC CACCTGCGTA ACGGCAAACC GCCCTACGAG
GCGGCGCTGG AGGCCGCGCA GGAAATCGGC CTCGCCGTGG TGGCCACGTC GCTCACGCTG
GTGGCGGTCT TCCTGCCGAC GGCCTTCATG GGGGGCATCT CGGGCAAGTT CTTCAAGCAG
TTTGGCTGGA CGGCGTCGCT GGCGGTGCTG GCCTCGTTGC TGGTCGCGCG CTTGCTGACG
CCAATGATGG CAGCCTACCT GCTCAAGCCC CAGGACGAGC CGAACCGCGA CGGCTGGATC
ATGGTGCGCT ACCTCCGCGC GGCGCGCTGG TGCCTGATCC ACCCGTGGAA GACGAGCGCC
ATGGCGGCCG TCTTCTTCGC GGTATCGGTG GCCATCATCG GGTTGATTCC TGCGACGTTC
CTTCCGCCCG AAGACTGGGC GCAGCTGCAG ATGACGGTGG AAAGCCCACC GGGCAGCACC
ATCGCGCAAA CGCGTGACAA CGTCGAGCGC GTGCGTAAGA TCGTCATGCA GCACAAGGAC
GTGCGCCGTG TCTACGCCGC CATCGGTTCG GGCGTGATGG CCGGCGTACC GGGCTCCAGC
GGCGGTGAGG TACGCACCGG CACGCTCACC ATCTCGCTCA CGGACCGCCA CGAGCGGCGT
ATCCGGCAGC AAGAGGTGCA GCGCCAGTTG CGCGAGATGC TGGAGGGCGT GCCCGGTGTG
CGCATTTCGT TCGGCGCTGT CGGTTCGGGC GAGCAATTGC AGGTGGTGCT CGCCGGCGAT
GATCCGGCAA CGTTGCAGCA GGCTTCCCGC GACGTGATGC GTGACCTGCG TACGGTGCCG
GGGCTGGGTG CGATCACCTC GTCGGCCAGT CTGCTTCGAC CAGAGATCGT GATCCGCCCG
GATTTTGCGC GGGCTGCCCA GCAAGGCGTG ACGGCTGCCG CCATCGGGCA GGCGGTGCGC
GTGGCCACCG CCGGCGACTA CGACGTCAAC CTGCCCAAGC TGAACCTGCC AGAGCGGCAG
GTGTACATCC GCGTCGAGCT GGACCCGAAG GCGCGCCACC AGATCGATAC GATCCGCCAG
TTGCGGGTGC CCGGCCGCAA TGGCGCAGTG CCGCTCGAAA ACATCGCCGA TATCACGCTC
GGCAGCGGCC CAGCCCAGAT CGATCGCTAT GACCGCAGCC GCAACGTCAC CATCAGCGTG
GGGCTGGAGG GACGCGCGCT CGGCGACACC AACATGGCGG TGGAGGCCCT GCCGGCCATC
AAGAACCTGC CGCCGGGTGT GCGCCGCATT GCCTCCGGGG ATGTCGAGGG CATGCAGGAG
CTGTTCAGCA GTTTCTTCCT CGCCATGCTC GCAGGTGTGC TGTGCGTGTA CGCGGTGCTG
GTGTTGCTGT TCCATGACTT CACGCAGCCG GTGACGATTC TGGCGGCCTT ACCGCTCTCG
GTGGGTGGGG CCTTTGGCCT GCTGGCGCTG TTCGGCTTCA GTCTGTCGCT GCCGGCGCTG
ATCGGCCTGC TCATGCTGAT GGGCATCGTC ACCAAGAACT CGATCCTGCT GGTTGAATAC
GCCATCGTGG CGCGGCGTGA TCTGGGCATG TCGCGCACGG AGGCCATCAT CGATGCGTGC
CACAAGCGTG CGCGCCCGAT CGTCATGACG ACTGTGGCGA TGACGGCCGG CATGGTGCCG
ATGGCACTCG GCCTGGAGGG CGACGCGGGC TTCCGTGCGC CCATGGCCGT GGCCGTGATC
GGCGGGCTGC TGACGTCGAC GTTGCTGAGC CTGCTGGTGG TGCCGGTGGT ATTCGAGAAG
GTGGACGACC TCAAGGAATG GACCCTGCGC AAGGTACGCG GCGCCCGCCG CCACGAGGTC
AAGGTGCAAC CTGAAGCAGA GCAGGGCGCG GGACAGGCGT AG
|
|---|
| Protein sequence | MNFSAWAIRK PIPPILLFIL MTVAGLVSFK MLSIQNFPDI DFPAVSITAS LPGATPTQME
TEVTRKIEDS VASIGAIKHI TSTVNDGSST TMVEFELEKD VQEAVNDVRD AVSRIRAQLP
SDVQEPVISR VTFAGMPVLT YAVDAPDMDA EDLSWFVDNT ISKRLLSVHG VAKVTRQGGV
DREVRVQLDP VRLQALNVTA ADISAQVRGV QQEAPGGRGN IGGQEQAVRT LGTVKSAREL
AQMDIPLSDG RRIRLSDVAD VRDTAAEPRQ MALLDGKPVV SFQVFRSRGA SEISVAKGVR
EALARLRTER PNVHVTEVYN MVKPVSDAYA ASMHALYEGA ILAVLVVWLF LRDWRATFVS
AVALPLSIIP TFAAMNMLGF TLNGITLLAL TLVVGILVDD AIVEVENIVR HLRNGKPPYE
AALEAAQEIG LAVVATSLTL VAVFLPTAFM GGISGKFFKQ FGWTASLAVL ASLLVARLLT
PMMAAYLLKP QDEPNRDGWI MVRYLRAARW CLIHPWKTSA MAAVFFAVSV AIIGLIPATF
LPPEDWAQLQ MTVESPPGST IAQTRDNVER VRKIVMQHKD VRRVYAAIGS GVMAGVPGSS
GGEVRTGTLT ISLTDRHERR IRQQEVQRQL REMLEGVPGV RISFGAVGSG EQLQVVLAGD
DPATLQQASR DVMRDLRTVP GLGAITSSAS LLRPEIVIRP DFARAAQQGV TAAAIGQAVR
VATAGDYDVN LPKLNLPERQ VYIRVELDPK ARHQIDTIRQ LRVPGRNGAV PLENIADITL
GSGPAQIDRY DRSRNVTISV GLEGRALGDT NMAVEALPAI KNLPPGVRRI ASGDVEGMQE
LFSSFFLAML AGVLCVYAVL VLLFHDFTQP VTILAALPLS VGGAFGLLAL FGFSLSLPAL
IGLLMLMGIV TKNSILLVEY AIVARRDLGM SRTEAIIDAC HKRARPIVMT TVAMTAGMVP
MALGLEGDAG FRAPMAVAVI GGLLTSTLLS LLVVPVVFEK VDDLKEWTLR KVRGARRHEV
KVQPEAEQGA GQA
|
|---|
| |