Gene Rpic12D_3354 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3354 
Symbolfmt 
ID8021039 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3538254 
End bp3539237 
Gene Length984 bp 
Protein Length327 aa 
Translation table11 
GC content69% 
IMG OID644832148 
Productmethionyl-tRNA formyltransferase 
Protein accessionYP_002983290 
Protein GI241664930 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0223] Methionyl-tRNA formyltransferase 
TIGRFAM ID[TIGR00460] methionyl-tRNA formyltransferase
[TIGR02019] bacteriochlorophyll 4-vinyl reductase 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGTCCA CCCTTCGCGT AGCGTTTGCC GGCACGCCTG AATTTGCGCA GATTGCCCTG 
GCGGCGATCC ACCAGGCCGG CTTTCCCGTC GTTGCCGTGC TGAGTCAGCC AGATCGTCCA
GCCGGACGCG GCATGCAATT GCAGGCAAGC CCCGTCAAGC AGTACGCCGT CACGCATGGG
TTCGCGCCGA TCCTGCAGCC GCCGTCGCTG CGCCGCGCAG GCAAATATCC GCAAGAAGCC
GCGGAAGTCA TCGACGCCCT GGCCGCCCAG CGTCCTGACG TGATGGTCGT CGCAGCCTAC
GGCCTGATCC TGCCGCAGGA AGTGCTCGAC CTGCCGCGCT TTGGCTGCAT CAACATCCAC
GCGTCGCTGC TGCCGCGCTG GCGTGGCGCC GCGCCCATCC ACCGTGCAAT CGAAGCGGGC
GACGCCGAAT CGGGCATCAC GCTCATGCAG ATGGATGCGG GTCTGGACAC CGGCGACATG
ATCGCCATGG AGCGCGTGCC CATCGGCCTG ACCGACACGA CCGGCACGCT GCACGACACG
CTGGCCGCGC TCGGCGGACG CATGGTGGTT GAGGCGCTCG CCAAGCTGGC GCAGTACGGC
AAGCTCCACG CCACGCCGCA GCCGGCCGAA GGCATCACGT ACGCGGAGAA GATCGCCAAG
GACGAAGCCG CGCTCGACTG GTCGCGCCAC GCCGCCGCGC TGCTGCGCCA GGTGCATGCG
TTCAATCCGT TTCCTGGCGC ATCGGCCGCG CTGGATGGCG TGGCGATCAA GTTCTGGCAG
GCGGAGGCGC TGGCCGATCG CCCGGCTGAG GCGGAACCCG GCACGGTACT CGCCGCCAAT
GCCGAGGGCG TCACCATCGC CTGCGGCGCC GGCGCGCTAC GCGTGACGCA ACTGCAAAAG
CCAGGCGGCA AGCGCCTGCC CGCACGCGAA TTCCTGCAAG GCCTCGCGAT CCAGCCCGGC
CAGCGCTTCG CATCGCGCGG CTAA
 
Protein sequence
MTSTLRVAFA GTPEFAQIAL AAIHQAGFPV VAVLSQPDRP AGRGMQLQAS PVKQYAVTHG 
FAPILQPPSL RRAGKYPQEA AEVIDALAAQ RPDVMVVAAY GLILPQEVLD LPRFGCINIH
ASLLPRWRGA APIHRAIEAG DAESGITLMQ MDAGLDTGDM IAMERVPIGL TDTTGTLHDT
LAALGGRMVV EALAKLAQYG KLHATPQPAE GITYAEKIAK DEAALDWSRH AAALLRQVHA
FNPFPGASAA LDGVAIKFWQ AEALADRPAE AEPGTVLAAN AEGVTIACGA GALRVTQLQK
PGGKRLPARE FLQGLAIQPG QRFASRG