| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3339 |
|---|
| Symbol | |
|---|
| ID | 8021023 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3520762 |
|---|
| End bp | 3522714 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644832132 |
|---|
| Product | Lytic transglycosylase catalytic |
|---|
| Protein accession | YP_002983275 |
|---|
| Protein GI | 241664915 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTGA AGGCCAAGGC AGTATATCGC GCGGTCGCGC TGGCTTTTGC GGGCGTGGTG
GGCATGAGCG TGGTCGGCCC GACGCCGCTG GCGATGGCCG CCAAGCGGCA GGCGCCGCAA
GGCATTCCGG CCAATCCGGA CGATGCATTT GTCGAGCTGC GCAACGCGGC CCGCCGCAAC
GATGTGTCGC GCAGCTGGGA GCTGGCGGAT AGCCTCGCCG ATTACCCGAT CCAGTCGTAC
GTGCAGTATT TCCGCATCAA GCCCCAGCTG TACGATGCCA GCGGCTATGC CCGCACCGAC
GCGCCGGAAG ATGAGATCCG CTCATTCCTG CAACGCTACA AGGGCGAGGC GATTGCCGAC
CGGTTGCGCA ACGACTGGCT GCTCGTGCTG GGCAAGAAGC GAGATTGGGC GACCTTCGAC
GCGGAGTACC CGAACTTCGT GCTGAAGGAC GACACGCAGG TCGAGTGCTA TGCCCTGCTC
TCGCGCGCGA TGAAGGGCCA GAACGTAGCC GCCGACGCGC GCAACACGCT GTCGGATCCC
AAGGGCTATG GCGAAGGCTG TGTCGACCTG ATCGGCTATC TGGCGCAGTC CAACCAGTTC
ACCCGCGCGG ATGTGGCGTG GGCGGCGCGG TTGTCGCTGG AGCAGAACCT TGTCACGCAG
GCGTCGCGCA TTGCGGCGGT GCTGCCGGAC GGCGATCGCG TGGACAACGA CACGCTGGCC
AACGTGACGC GCATGGCGCG CAACGATCCG TCGCAGGCGA CGGCGTATCT GCTGGCGCAA
ACCGGCAGCC TGTCGCGCGA AGAGCAAGGC GCGGGCTGGG GCGTCATCGG CCAGTACGCC
GCCAAGAAGC AGACGCCCGA TGCGCTGGAC GCCTACCGCC GCCAGTTGAC GCTTGGCGGC
GATGCCTACC TCTCTGACGA GTCGCAGGAG TGGCGCGTGC GCGCGGCCCT ACGCGCCGGG
GACTGGAAGA TGGTGCGGCA GGCCGTTGAG AAAATGCGCC CCAGCCTGCG CGATCGGGAC
CCTGCCTGGG CGTATTGGTA TGGCCGCGCG CTCAAGGCCG ACAATCGCAA CGACGATGCC
CGCCAGCAGT TCCAGTCGAT TGCCGGGCAG TTCAACTTCT ATGGCCAGCT GGCGCAGGAA
GAACTCGGTC AGCGCATCAC CGTGCCGCCG CGCACGACCG TGACCGACGC CGAGATCGAC
GTGATGGGGC GCAACCACCC GGGCTTTGGG CGTGCCAAGA AGCTGTACGA CCTGAATCTG
CGCTTCGAAG GCAACCGCGA GTGGAACTGG GAGCTGCGCA ACATGAGCGA CCGCGAGTTG
CTGGCCGCAG CCGAATATGG CCGCAAGCTC GGCCTGCTCG ATCGCACCGT CAATTCGGCG
GACAAGACCA AGGCCGAGCA CGACTTCTCG CTGCGCTTCC CGACGCCGTA TCTCAATGTG
GTTCAGCGCA ACGCCGATGC CGTGGGGCTG GACATTGCCT GGGCCTATGG CCTGATCCGC
CAGGAGTCGC GCTTCATCAT GGACGCCCGT TCGTCGGTGG GTGCCTCGGG CCTGATGCAG
GTGATGCCGG AAACCGCCAA GCACATTGCC AAGAAGATCG GCCTGCCGGG GTTCCGCGTT
TCGCAGATGA GCGACATCGA TACCAACGTG CTGCTGGGCA CCGCGTACCT GTCGATGATC
CTGACGAACC TCGACAGCTC CGTCACGCTG GCGACCGCGG GCTACAACGC CGGCCCAGGC
CGCCCGAAAC GCTGGCGCTC GACGCTCACG CGGCCGGTGG AAGGCGCGAT CTTCGCCGAG
ACGATTCCGT TCAACGAGAC CCGCACCTAT GTGAAAAACG TGCTCTCGAA CGCGACGTAT
TACAGCGCAT TGCTGACCGG TCGGCCGCAG TCGCTGAAGG ATCGGCTGGG CAAGGTGGTG
CCCGAATCGG TCACGCCGGA CGACCTGCCA TAA
|
|---|
| Protein sequence | MTLKAKAVYR AVALAFAGVV GMSVVGPTPL AMAAKRQAPQ GIPANPDDAF VELRNAARRN
DVSRSWELAD SLADYPIQSY VQYFRIKPQL YDASGYARTD APEDEIRSFL QRYKGEAIAD
RLRNDWLLVL GKKRDWATFD AEYPNFVLKD DTQVECYALL SRAMKGQNVA ADARNTLSDP
KGYGEGCVDL IGYLAQSNQF TRADVAWAAR LSLEQNLVTQ ASRIAAVLPD GDRVDNDTLA
NVTRMARNDP SQATAYLLAQ TGSLSREEQG AGWGVIGQYA AKKQTPDALD AYRRQLTLGG
DAYLSDESQE WRVRAALRAG DWKMVRQAVE KMRPSLRDRD PAWAYWYGRA LKADNRNDDA
RQQFQSIAGQ FNFYGQLAQE ELGQRITVPP RTTVTDAEID VMGRNHPGFG RAKKLYDLNL
RFEGNREWNW ELRNMSDREL LAAAEYGRKL GLLDRTVNSA DKTKAEHDFS LRFPTPYLNV
VQRNADAVGL DIAWAYGLIR QESRFIMDAR SSVGASGLMQ VMPETAKHIA KKIGLPGFRV
SQMSDIDTNV LLGTAYLSMI LTNLDSSVTL ATAGYNAGPG RPKRWRSTLT RPVEGAIFAE
TIPFNETRTY VKNVLSNATY YSALLTGRPQ SLKDRLGKVV PESVTPDDLP
|
|---|
| |