| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Rpic12D_3289 |
|---|
| Symbol | |
|---|
| ID | 8020973 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia pickettii 12D |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012856 |
|---|
| Strand | + |
|---|
| Start bp | 3471490 |
|---|
| End bp | 3472947 |
|---|
| Gene Length | 1458 bp |
|---|
| Protein Length | 485 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644832084 |
|---|
| Product | transcriptional regulator, GntR family with aminotransferase domain protein |
|---|
| Protein accession | YP_002983227 |
|---|
| Protein GI | 241664867 |
|---|
| COG category | [E] Amino acid transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1167] Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATGTCC ATTTGACGAT CCACGGCCGG CACGACCTTG CCGGCCAACT CTATCGACAA
CTCCGCACCG CCATCCTCGA TGGTCGGCTC GTGCCGGGCG AGCGCCTGCC CTCCACGCGC
GACCTCGCGC TGCAGATCGG TGTGTCGCGC AAGACCACGC TCGACGTATT CGAGCGCCTC
ATTGCGGAAG GCTATCTACA GCCGCGCGCC GGCTCCGGCA CGTTTGTGGC CGAAGCCACC
GAAGGATTGC GCGCCCGCAC GCCGGCCGCC TCGCCTGCGG CGCAACTTGC GTCGCCCACG
CCCGCCGTAC GCACCTTCGA CACGCCCTGG AACAACATGC CCGCGGTGCT GCCCCTGCCG
CGCGCGAATC TCGTCTACGA CTTTGCGGGT GGCGTGACGG AGAAGCGCCA GTTTCCGTTC
GACGTGTGGC GCCGTTGTGT TGCGCATGCG CTGCGCCAGC AGGCACGCGG GCGTGGCGGC
TATCAGGACC CTGCGGGCGA CCAGGCGCTG CGCCTGGCCA TCTCGCGGTA TCTCGCATTC
AGCCGCGCGG TGGTGTGCGC TTGGGCCGAT ATTGTCGTCA CGCAGGGCGC GCAGCAGGCC
ATCGACCTGA TCGCTCGCGT GCTCGTGCGC CCCGGGGATA CGGTGGCGAT TGAAGACCCG
GGTTACCCGC CCGCGCGCAT TGCGCTGCAG GCCCTCGGTG CCAAGGTCGT GCCGGTGCCG
GTCGATGCGG AAGGCCTGGT CGTCGATGCG CTGCCCAAGC GCGCCAAGCT CGTCTACGTA
ACGCCGTCGC ACCAGTTTCC GCTGGGCATG CCGATGAGCC TGGCGCGCCG AGCGCAACTG
CTCGACTGGG CGCAGCGCCA TGACGCGCTG ATCATCGAAG ACGATTACGA CAGCGAATTC
CGCTTCGACG GCCGTCCGAT GGAATCGCTC AAGAGTCTGG ACGCTGCGGG TTGCGTCGCT
TATGTGGGTA CGTTTTCGAA GACGATCTTT CCGGAACTGC GGATCGGCTA TGTGGTGCCG
CCGGCCTCGC TGGTGACGCC GTTGCGGCAC GCCAAGCAGG TGGCCGACTG GCACACTGAA
TCGCTCATGC AGGCGGCGCT GGGCAAGTTC ATGCTCGACG GCGATTTCGC CAAGTACCTG
CGGCGCATGC ACAAGGAATA CGCGGCGCGC CGGGATGCGC TGCTGCGGCA TCTGCGGGGC
CCGCTGGCAC CGTGGCTGAC GCCCGTGCCG TCGGCGGCGG GCATTCACAT GGCAGCGCAG
GTGGGCCCAC CGTTGCCCGA GGCCGAGCTG GTGAAGCTGG CGGAAAGCGT GGGCGTCGGG
CTGTACGGCA CGGCCAGGAT GTATGTGGCG CGGCCGGCGC AACCCGGGCT GCTGATCGGC
TATGGCCACG TGAACGTTGC CGAGATCGAC GCGGGCCTCG GCAAGCTGGC GGAGGCGCTG
ACCAAGGTGG CTACCTGA
|
|---|
| Protein sequence | MDVHLTIHGR HDLAGQLYRQ LRTAILDGRL VPGERLPSTR DLALQIGVSR KTTLDVFERL
IAEGYLQPRA GSGTFVAEAT EGLRARTPAA SPAAQLASPT PAVRTFDTPW NNMPAVLPLP
RANLVYDFAG GVTEKRQFPF DVWRRCVAHA LRQQARGRGG YQDPAGDQAL RLAISRYLAF
SRAVVCAWAD IVVTQGAQQA IDLIARVLVR PGDTVAIEDP GYPPARIALQ ALGAKVVPVP
VDAEGLVVDA LPKRAKLVYV TPSHQFPLGM PMSLARRAQL LDWAQRHDAL IIEDDYDSEF
RFDGRPMESL KSLDAAGCVA YVGTFSKTIF PELRIGYVVP PASLVTPLRH AKQVADWHTE
SLMQAALGKF MLDGDFAKYL RRMHKEYAAR RDALLRHLRG PLAPWLTPVP SAAGIHMAAQ
VGPPLPEAEL VKLAESVGVG LYGTARMYVA RPAQPGLLIG YGHVNVAEID AGLGKLAEAL
TKVAT
|
|---|
| |