Gene Rpic12D_3275 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRpic12D_3275 
Symbol 
ID8020959 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia pickettii 12D 
KingdomBacteria 
Replicon accessionNC_012856 
Strand
Start bp3458672 
End bp3460075 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content70% 
IMG OID644832070 
Productmajor facilitator superfamily MFS_1 
Protein accessionYP_002983213 
Protein GI241664853 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones30 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTGACGG CGCAATTCAT GTTCATCGTC GATGCGTTCA TCGCCAATGT GGCGATTCCG 
AGCATCCGTA CGAGCCTGCA TGCCACACCC GCGCAACTGG AGGCCGTGCT GGCGGTGTAC
CAGCTTGGCT ACGCGATTCT GCTCATCACT GGCGGCCGTC TGGGCGATCT GTTCGGGCGC
AGGCGCGTGT TCCTGCTCGG TCTCGTCGCT TTTACCGCCA CCTCGGCCGG TTGTGGGCTG
GCGGGCAGCG CGGCGGCGCT GATCGCATGG CGTTTCGCGC AGGGCCTGTC CGCCGCGATG
ATGGTGCCGC AGGTGCTGGC GAGCGTGCAG GCGCTCTTTG CCGGCGCCGA GCGCGACCGC
GCGCTGTCGA TTTTCGGCCT GGTGATGGGT ACCGGCGGGG CGGCCGGGTT GCTGGTGGGC
GGCGCACTCA CCAGCGCCGA CATCGCCGGG CTGGGCTGGC GCGCGGCCTT CCTGATCAAC
GTACCGGTCG GGCTGACGGC CGCGCTGCTG GGCGGGCGCT GGATCCCGCA CCCAAGCCCC
GACGCGGCAA AGGTGCATCT CGATACCGTC GGCGTGGCGT GGATGGCCGT CAGCGTGGCC
GCCGTGCTGG TGCCGCTGCT GTTCGGCCGC GAGCTGCACT GGCCGGTGTG GACCCTGGCA
CTGCTGGTCG TAGGCGTACT GGGCATGGCA ACGTTCCAGC AGCTCGAGGC CCGTGTCGAC
CGCGTTGGCG GTACGCCGCT GCTGCCGCCC ACCTTGCTGC AGCATCGCGC CTTCATAACC
GGCCTGACGG CATCGGCGCT GCACTACATC GGGATGATGG CCTTCTTCCT GGTGCTGACG
CTGTATCTGC AAAACGGGCG GCAGCTGTCT GCGGTGCGCA TGGGCGTCGC CATCCTGCCG
CTGGCCATCA CCTTTCTGAT GACGTCGCGG GTGGCGAATG CGCTGGTGAG GCGCCATGGC
GTTCGCGCGC TGTTGGCAGG CCTCGGCCTG ATGGCGCTGG GACTGCTGAC GCTGCTGTCG
GGTTTCGGCA CGGCGTGGGC GCACCCCGCC ACGCCGAGCA TGGCGCGCAT CGGCATTGCG
GTGGCGCTGT ACGGCGCGGG GCAAGGCCTG GTCGTTGTCC CGTTGATCGG CCTGGTGCTG
ACCGGCGTGG CACGCACGCA AGCCGGTGCA GCAGCAGGGC TGCTGATTAC CGCGCAGCAG
TTGGCGGGCG CGCTGGGCGT CGCCTGTATC GGCGGGCTGT ATTTCACGTT TGCCGCAGGC
GGCGGTGCCA TCGGCATGGC GCACGGCACG ATGGCGGGAT GCTTCGCCAT GTTGGCGGCG
CTCGGCGCGG CGGCCGTGGG TTTTGCGCGA CTGGGCGCAC AGCAGCGGCA ACTGGCCGCG
GCCGGCGCGG TAAGTCCGGC CTGA
 
Protein sequence
MVTAQFMFIV DAFIANVAIP SIRTSLHATP AQLEAVLAVY QLGYAILLIT GGRLGDLFGR 
RRVFLLGLVA FTATSAGCGL AGSAAALIAW RFAQGLSAAM MVPQVLASVQ ALFAGAERDR
ALSIFGLVMG TGGAAGLLVG GALTSADIAG LGWRAAFLIN VPVGLTAALL GGRWIPHPSP
DAAKVHLDTV GVAWMAVSVA AVLVPLLFGR ELHWPVWTLA LLVVGVLGMA TFQQLEARVD
RVGGTPLLPP TLLQHRAFIT GLTASALHYI GMMAFFLVLT LYLQNGRQLS AVRMGVAILP
LAITFLMTSR VANALVRRHG VRALLAGLGL MALGLLTLLS GFGTAWAHPA TPSMARIGIA
VALYGAGQGL VVVPLIGLVL TGVARTQAGA AAGLLITAQQ LAGALGVACI GGLYFTFAAG
GGAIGMAHGT MAGCFAMLAA LGAAAVGFAR LGAQQRQLAA AGAVSPA